Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB3U43_RS22865 Genome accession   NZ_CP162629
Coordinates   3642898..3644136 (-) Length   412 a.a.
NCBI ID   WP_044796944.1    Uniprot ID   -
Organism   Bacillus cereus strain L6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3637898..3649136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U43_RS22840 (AB3U43_22840) spoVS 3637984..3638244 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  AB3U43_RS22845 (AB3U43_22845) - 3638394..3639188 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  AB3U43_RS22850 (AB3U43_22850) rny 3639351..3640913 (-) 1563 WP_000204911.1 ribonuclease Y -
  AB3U43_RS22855 (AB3U43_22855) - 3641395..3641817 (-) 423 Protein_3606 DNA recombination/repair protein RecA -
  AB3U43_RS22860 (AB3U43_22860) recA 3642145..3642753 (-) 609 Protein_3607 recombinase RecA -
  AB3U43_RS22865 (AB3U43_22865) cinA 3642898..3644136 (-) 1239 WP_044796944.1 competence/damage-inducible protein A Machinery gene
  AB3U43_RS22870 (AB3U43_22870) pgsA 3644157..3644735 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3U43_RS22875 (AB3U43_22875) - 3644800..3645711 (-) 912 WP_086392608.1 helix-turn-helix domain-containing protein -
  AB3U43_RS22880 (AB3U43_22880) - 3645733..3646518 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  AB3U43_RS22885 (AB3U43_22885) - 3646657..3646905 (-) 249 WP_000114450.1 DUF3243 domain-containing protein -
  AB3U43_RS22890 (AB3U43_22890) - 3646981..3647694 (-) 714 WP_000759607.1 SDR family oxidoreductase -
  AB3U43_RS22895 (AB3U43_22895) - 3647795..3649081 (-) 1287 WP_000411983.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45448.83 Da        Isoelectric Point: 5.6809

>NTDB_id=1027624 AB3U43_RS22865 WP_044796944.1 3642898..3644136(-) (cinA) [Bacillus cereus strain L6]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIAAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANNHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKDEPTVVFPLNLSGSRQQIRERTVKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1027624 AB3U43_RS22865 WP_044796944.1 3642898..3644136(-) (cinA) [Bacillus cereus strain L6]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
CAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATAACCACGGTATGG
CGCCAGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTTGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTGCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTA
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGA
TTAAGGATGAGCCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGTAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.01

100

0.58
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

40.053

91.505

0.367

Multiple sequence alignment