Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB3472_RS03990 Genome accession   NZ_CP162518
Coordinates   892608..893816 (-) Length   402 a.a.
NCBI ID   WP_034102097.1    Uniprot ID   -
Organism   Pseudomonas lurida strain BF8PS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 887608..898816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3472_RS03950 (AB3472_03935) - 888526..888699 (-) 174 WP_016976295.1 DUF3094 family protein -
  AB3472_RS03955 (AB3472_03940) - 888754..889383 (-) 630 WP_010213242.1 DUF1780 domain-containing protein -
  AB3472_RS03960 (AB3472_03945) - 889487..889954 (+) 468 WP_122749609.1 FAD/FMN-containing dehydrogenase -
  AB3472_RS03965 (AB3472_03950) - 889951..890640 (+) 690 WP_069021700.1 energy-coupling factor ABC transporter permease -
  AB3472_RS03970 (AB3472_03955) - 890716..890931 (+) 216 WP_003171680.1 hypothetical protein -
  AB3472_RS03975 (AB3472_03960) yacG 890928..891128 (-) 201 WP_034102092.1 DNA gyrase inhibitor YacG -
  AB3472_RS03980 (AB3472_03965) coaE 891125..891748 (-) 624 WP_069021704.1 dephospho-CoA kinase -
  AB3472_RS03985 (AB3472_03970) pilD 891745..892611 (-) 867 WP_397456572.1 prepilin peptidase Machinery gene
  AB3472_RS03990 (AB3472_03975) pilC 892608..893816 (-) 1209 WP_034102097.1 type II secretion system F family protein Machinery gene
  AB3472_RS03995 (AB3472_03980) - 894019..894432 (+) 414 WP_034102485.1 pilin -
  AB3472_RS04000 (AB3472_03985) - 894468..895868 (+) 1401 WP_105161638.1 O-antigen ligase -
  AB3472_RS04010 (AB3472_03995) - 896149..896454 (+) 306 WP_034102101.1 DUF6388 family protein -
  AB3472_RS04015 (AB3472_04000) nadC 896529..897377 (-) 849 WP_034102102.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43311.75 Da        Isoelectric Point: 10.1711

>NTDB_id=1026813 AB3472_RS03990 WP_034102097.1 892608..893816(-) (pilC) [Pseudomonas lurida strain BF8PS1]
MDDASTLYAWEGINRKGRRVSGQTTGHSVARVKVQLRQQGISPGHVRKKSPVLPSFVPSIKPADITLFTRQLATLLKAGI
PLLQAFDVIGEGFDNRPMRKLVQGLKQAIAAGTSLAEALRKQPHYFDALYCNLVAAGEQAGALETLLERVAIHREKSEQL
KARIKKAMTYPITVLVVASLVTGVLLVHVVPQFQTLFAGVDGKLPGFTLQVIALSEFMQKAWWIIALGILAAGLGLRHAY
RTFADVRAWLDSCLLKTPLAGKLLSKSAVARYARTLSTTFAAGVPLVQALDSVAGAAGSGPFRQAIEHMRRDVATGMQLN
QSMVASGLFPRMAIQMTAIGEESGTLDSMLEKVASHYEADVDNVVDNLTNLMEPLIMVVLGGIVGALVVAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1026813 AB3472_RS03990 WP_034102097.1 892608..893816(-) (pilC) [Pseudomonas lurida strain BF8PS1]
ATGGACGACGCTTCAACGCTCTACGCCTGGGAAGGCATCAACCGCAAAGGACGCAGGGTGTCCGGGCAGACCACCGGGCA
CAGCGTTGCAAGGGTCAAGGTTCAGTTACGCCAACAGGGCATCAGCCCTGGGCATGTGCGCAAGAAATCCCCAGTGCTGC
CGAGCTTCGTACCCTCGATCAAGCCGGCGGACATCACCCTGTTCACGCGCCAACTGGCTACGCTGCTCAAGGCCGGGATT
CCTCTCCTGCAAGCCTTCGACGTCATCGGTGAAGGTTTCGACAACCGGCCCATGCGTAAGCTGGTGCAAGGGTTGAAACA
GGCGATTGCCGCCGGCACCAGCCTTGCCGAGGCGCTGCGCAAGCAACCTCATTATTTCGACGCGCTGTACTGCAACCTGG
TAGCCGCCGGCGAACAGGCCGGAGCCCTTGAAACCTTGCTGGAACGCGTGGCAATCCACCGAGAGAAGAGCGAACAGCTA
AAGGCCAGGATCAAAAAAGCCATGACCTATCCGATCACCGTGCTGGTGGTCGCCAGTCTCGTCACCGGCGTGCTGCTGGT
CCACGTCGTGCCACAGTTCCAGACGCTGTTCGCCGGCGTCGACGGCAAGCTGCCTGGCTTCACATTGCAGGTGATCGCCC
TTTCCGAATTCATGCAGAAAGCCTGGTGGATCATCGCGCTGGGCATTCTTGCGGCAGGCTTGGGGTTGCGCCACGCCTAC
CGTACCTTCGCCGATGTTCGTGCCTGGCTGGACAGCTGTTTGTTGAAAACGCCCCTGGCAGGCAAACTGCTGAGCAAATC
CGCCGTGGCCCGCTACGCCCGCACGCTTTCCACCACGTTTGCCGCCGGCGTTCCGTTGGTGCAGGCGCTGGACTCGGTGG
CCGGGGCCGCCGGTTCAGGGCCGTTCAGACAGGCAATCGAACATATGCGACGCGACGTAGCGACGGGCATGCAATTGAAT
CAATCCATGGTCGCCAGCGGCCTGTTTCCCCGCATGGCGATCCAGATGACAGCCATCGGCGAAGAATCAGGCACGCTGGA
CAGCATGCTGGAAAAGGTCGCCAGCCATTACGAGGCCGATGTGGATAACGTGGTCGATAACCTCACCAACCTTATGGAGC
CGCTGATTATGGTGGTACTGGGAGGGATCGTCGGCGCACTGGTGGTCGCGATGTATTTACCGGTATTCCAGTTGGGGAGC
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.596

98.507

0.587
  pilC Acinetobacter baumannii D1279779

51.646

98.259

0.507
  pilC Acinetobacter baylyi ADP1

51.263

98.507

0.505
  pilC Legionella pneumophila strain ERS1305867

48.861

98.259

0.48
  pilC Vibrio cholerae strain A1552

41.919

98.507

0.413
  pilC Vibrio campbellii strain DS40M4

40.05

98.756

0.396
  pilG Neisseria gonorrhoeae MS11

41.253

95.274

0.393
  pilG Neisseria meningitidis 44/76-A

39.583

95.522

0.378

Multiple sequence alignment