Detailed information NTG1026812

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB3472_RS03985
• Genome accession: NZ_CP162518
• Coordinates: 891745..892611 (-)
• Length: 288 a.a.
• NCBI ID: WP_397456572.1
• Uniprot ID: -
• Organism: Pseudomonas lurida strain BF8PS1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 886745..897611

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3472_RS03945 (AB3472_03930)	-	887167..888465 (-)	1299	WP_034102086.1	NAD(P)/FAD-dependent oxidoreductase	-
AB3472_RS03950 (AB3472_03935)	-	888526..888699 (-)	174	WP_016976295.1	DUF3094 family protein	-
AB3472_RS03955 (AB3472_03940)	-	888754..889383 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
AB3472_RS03960 (AB3472_03945)	-	889487..889954 (+)	468	WP_122749609.1	FAD/FMN-containing dehydrogenase	-
AB3472_RS03965 (AB3472_03950)	-	889951..890640 (+)	690	WP_069021700.1	energy-coupling factor ABC transporter permease	-
AB3472_RS03970 (AB3472_03955)	-	890716..890931 (+)	216	WP_003171680.1	hypothetical protein	-
AB3472_RS03975 (AB3472_03960)	yacG	890928..891128 (-)	201	WP_034102092.1	DNA gyrase inhibitor YacG	-
AB3472_RS03980 (AB3472_03965)	coaE	891125..891748 (-)	624	WP_069021704.1	dephospho-CoA kinase	-
AB3472_RS03985 (AB3472_03970)	pilD	891745..892611 (-)	867	WP_397456572.1	prepilin peptidase	Machinery gene
AB3472_RS03990 (AB3472_03975)	pilC	892608..893816 (-)	1209	WP_034102097.1	type II secretion system F family protein	Machinery gene
AB3472_RS03995 (AB3472_03980)	-	894019..894432 (+)	414	WP_034102485.1	pilin	-
AB3472_RS04000 (AB3472_03985)	-	894468..895868 (+)	1401	WP_105161638.1	O-antigen ligase	-
AB3472_RS04010 (AB3472_03995)	-	896149..896454 (+)	306	WP_034102101.1	DUF6388 family protein	-
AB3472_RS04015 (AB3472_04000)	nadC	896529..897377 (-)	849	WP_034102102.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31754.95 Da
• Isoelectric Point: 8.2455

>NTDB_id=1026812 AB3472_RS03985 WP_397456572.1 891745..892611(-) (pilD) [Pseudomonas lurida strain BF8PS1]
MSLLLAGHPWAFIALASVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPAEPAGPTYNLMHPNSCCPQCNYPIRPW
ENIPLLSYLFLRGRCAQCQKAISVRYPLTELACGLISAWVAWHFGFGWPAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPDALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVF
VGLILMRLRKAQASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=1026812 AB3472_RS03985 WP_397456572.1 891745..892611(-) (pilD) [Pseudomonas lurida strain BF8PS1]
TTGAGCCTGCTGCTGGCTGGCCACCCCTGGGCATTTATTGCGCTGGCGTCAGTGCTGGGACTGATCGTCGGCAGTTTTCT
CAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTCGAACGGGAATGGCGTGCGCAGGCCCACGAAGTACTCGGCTTGCCCG
CTGAACCTGCCGGCCCGACCTACAACCTGATGCACCCCAACTCCTGCTGCCCGCAGTGCAATTATCCGATACGCCCGTGG
GAAAACATCCCACTGCTCAGCTATCTGTTTCTGCGAGGCCGCTGCGCCCAATGCCAAAAGGCAATCAGCGTCCGTTATCC
GCTCACTGAACTGGCGTGCGGGTTGATCTCGGCCTGGGTTGCCTGGCATTTCGGCTTTGGCTGGCCAGCGGGCGCGGTGC
TGGTACTGAGTTGGGGGTTGTTGGCGATGAGCCTGATCGATGCCGATCACCAACTGTTGCCGGATGTGCTGGTGATGCCG
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGACTGCTGACGACACTGCCCGATGCCCTGTGGGGCGCGGTGATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTTACCGGCAAGGACGGCATGGGCCATGGTGACTTCAAGC
TGCTGGCGCTGCTCGGTGCCTGGGGCGGCTGGCAGATTCTGCCGATGACGCTGTTGATGTCGTCACTGGTAGGTGTGTTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGGCCCAGGCATCGGCACCGATGCCATTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.763	96.875	0.521
pilD	Vibrio campbellii strain DS40M4	50.714	97.222	0.493
pilD	Neisseria gonorrhoeae MS11	51.111	93.75	0.479
pilD	Acinetobacter nosocomialis M2	48.718	94.792	0.462
pilD	Acinetobacter baumannii D1279779	48.718	94.792	0.462