Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB3470_RS09080 Genome accession   NZ_CP162517
Coordinates   1733017..1734267 (+) Length   416 a.a.
NCBI ID   WP_015715898.1    Uniprot ID   A0A8E0SA28
Organism   Bacillus subtilis strain BF12B1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1728017..1739267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3470_RS09050 (AB3470_09040) yfmH 1728107..1729393 (+) 1287 WP_003231858.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB3470_RS09055 (AB3470_09045) ymfI 1729448..1730176 (+) 729 WP_015715897.1 elongation factor P 5-aminopentanone reductase -
  AB3470_RS09060 (AB3470_09050) ymfJ 1730257..1730514 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  AB3470_RS09065 (AB3470_09055) - 1730644..1731435 (+) 792 WP_003220998.1 YmfK family protein -
  AB3470_RS09070 (AB3470_09060) rodZ 1731502..1732368 (+) 867 WP_010886511.1 cell shape determination protein RodZ -
  AB3470_RS09075 (AB3470_09065) pgsA 1732418..1732999 (+) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3470_RS09080 (AB3470_09070) cinA 1733017..1734267 (+) 1251 WP_015715898.1 competence/damage-inducible protein A Machinery gene
  AB3470_RS09085 (AB3470_09075) recA 1734440..1735486 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  AB3470_RS09090 (AB3470_09080) pbpX 1735654..1736829 (+) 1176 WP_029726484.1 serine hydrolase -
  AB3470_RS09095 (AB3470_09085) rny 1737105..1738667 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45613.94 Da        Isoelectric Point: 5.3737

>NTDB_id=1026767 AB3470_RS09080 WP_015715898.1 1733017..1734267(+) (cinA) [Bacillus subtilis strain BF12B1]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVVCYTNDVKQNVLG
VKKETLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGYRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1026767 AB3470_RS09080 WP_015715898.1 1733017..1734267(+) (cinA) [Bacillus subtilis strain BF12B1]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACTGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGTAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGAAACATTAGATCGTTTTGGGGCGGTCAGCAAGGAATGCGCATCAGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAACGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTACAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.76

100

0.998
  cinA Streptococcus mitis SK321

45.455

100

0.457
  cinA Streptococcus mitis NCTC 12261

45.455

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus pneumoniae TIGR4

45.215

100

0.454
  cinA Streptococcus pneumoniae Rx1

44.976

100

0.452
  cinA Streptococcus pneumoniae R6

44.976

100

0.452
  cinA Streptococcus pneumoniae D39

44.737

100

0.45
  cinA Streptococcus suis isolate S10

40.561

94.231

0.382

Multiple sequence alignment