Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB0764_RS19135 Genome accession   NZ_CP162497
Coordinates   3641191..3642432 (-) Length   413 a.a.
NCBI ID   WP_279400968.1    Uniprot ID   -
Organism   Priestia megaterium strain 10     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3636191..3647432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0764_RS19115 (AB0764_19110) spoVS 3636750..3637010 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  AB0764_RS19120 (AB0764_19115) - 3637234..3638031 (-) 798 WP_042991933.1 TIGR00282 family metallophosphoesterase -
  AB0764_RS19125 (AB0764_19120) rny 3638113..3639672 (-) 1560 WP_013058803.1 ribonuclease Y -
  AB0764_RS19130 (AB0764_19125) recA 3639953..3640990 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  AB0764_RS19135 (AB0764_19130) cinA 3641191..3642432 (-) 1242 WP_279400968.1 competence/damage-inducible protein A Machinery gene
  AB0764_RS19140 (AB0764_19135) pgsA 3642449..3643033 (-) 585 WP_013058806.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB0764_RS19145 (AB0764_19140) - 3643178..3644161 (-) 984 WP_226554946.1 helix-turn-helix domain-containing protein -
  AB0764_RS19150 (AB0764_19145) - 3644174..3644965 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  AB0764_RS19155 (AB0764_19150) - 3645180..3645440 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  AB0764_RS19160 (AB0764_19155) ymfI 3645506..3646231 (-) 726 WP_014458485.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44811.93 Da        Isoelectric Point: 4.9863

>NTDB_id=1026578 AB0764_RS19135 WP_279400968.1 3641191..3642432(-) (cinA) [Priestia megaterium strain 10]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRVMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVDGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADTAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGAGEAVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLCKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKGQAPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1026578 AB0764_RS19135 WP_279400968.1 3641191..3642432(-) (cinA) [Priestia megaterium strain 10]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAAACGCGTGCGGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTGTCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCAGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGGTAGATGGAAAACACTATATGCTATTTCCCGGGCCACCAAAAGAGCTTTATCCAATG
TATGAATCGTACGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGCTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAACCCGACGATTGCGCCGCTAG
CGGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTGATACTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTGTATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCTGAGAGTTTAACCGGCGGTTTATTTAGCGAACGCTTAACAACTGTTT
CAGGTGCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATGCAAAAC
GGATATTGGCATCGGGTTTACAGGTGTAGCTGGACCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGAG
TAGCCTATAAAGGTCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGTCGCCAGGGGATTCGTTCACGAACGGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.512

99.274

0.591
  cinA Streptococcus mitis NCTC 12261

47.143

100

0.479
  cinA Streptococcus mitis SK321

46.429

100

0.472
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.47
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.465
  cinA Streptococcus pneumoniae R6

45.714

100

0.465
  cinA Streptococcus pneumoniae D39

45.476

100

0.462
  cinA Streptococcus mutans UA159

45.122

99.274

0.448
  cinA Streptococcus suis isolate S10

39.683

91.525

0.363

Multiple sequence alignment