Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB1F57_RS12665 Genome accession   NZ_CP162268
Coordinates   2508799..2509980 (-) Length   393 a.a.
NCBI ID   WP_105138615.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2503799..2514980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS12635 (AB1F57_12635) - 2504461..2505717 (+) 1257 WP_174853283.1 ISL3 family transposase -
  AB1F57_RS12640 (AB1F57_12640) - 2505877..2506194 (-) 318 WP_105138618.1 DUF1292 domain-containing protein -
  AB1F57_RS12645 (AB1F57_12645) ruvX 2506213..2506632 (-) 420 WP_170239043.1 Holliday junction resolvase RuvX -
  AB1F57_RS12650 (AB1F57_12650) - 2506632..2506898 (-) 267 WP_105111771.1 IreB family regulatory phosphoprotein -
  AB1F57_RS12655 (AB1F57_12655) spx 2507005..2507403 (-) 399 WP_105111770.1 transcriptional regulator Spx -
  AB1F57_RS12660 (AB1F57_12660) recA 2507563..2508747 (-) 1185 WP_105138616.1 recombinase RecA Machinery gene
  AB1F57_RS12665 (AB1F57_12665) cinA 2508799..2509980 (-) 1182 WP_105138615.1 competence/damage-inducible protein A Machinery gene
  AB1F57_RS12670 (AB1F57_12670) - 2510050..2510625 (-) 576 WP_367985825.1 DNA-3-methyladenine glycosylase I -
  AB1F57_RS12675 (AB1F57_12675) - 2510625..2511266 (-) 642 WP_174852925.1 hypothetical protein -
  AB1F57_RS12680 (AB1F57_12680) ruvA 2511275..2511865 (-) 591 WP_167786098.1 Holliday junction branch migration protein RuvA -
  AB1F57_RS12685 (AB1F57_12685) mutL 2511872..2513821 (-) 1950 WP_367985826.1 DNA mismatch repair endonuclease MutL -
  AB1F57_RS12690 (AB1F57_12690) - 2513944..2514120 (-) 177 WP_167786100.1 hypothetical protein -
  AB1F57_RS12695 (AB1F57_12695) - 2514165..2514611 (-) 447 WP_125266297.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42742.96 Da        Isoelectric Point: 4.7426

>NTDB_id=1024720 AB1F57_RS12665 WP_105138615.1 2508799..2509980(-) (cinA) [Streptococcus sp. ZY1909104]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNEKRLLSVLEIASKRSDMVILCGGLGPTEDDLTKQT
LAQFLGRDLVFDKRAVDKLNRFFASRPGRIRTPNNERQAQLVAGSIPLHNPTGLAVGSMIEQDGVTYIVLPGPPSELKAM
FAQSLLPLLTQSEQQLYSRVLRFFGIGESQLVTILADLIDQQMDPTLAPYAKTGEVTLRLSTKATSQAEADVKLTQLEKT
ILERDNLAKYLYAYGEDNSLAKTVADLLVDKQQTLSILEQGTGGQLQAELSATMTDQMYFSGGQVRGQGPISSDSLVTEA
SQLRKELATDLTLAVSVAVKPQSTVDNVLAKVSLVLVSTSGIVQKEVDLGGYSWLYLRQLACLQALDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1024720 AB1F57_RS12665 WP_105138615.1 2508799..2509980(-) (cinA) [Streptococcus sp. ZY1909104]
ATGAAAGCAGAACTCATCGCCGTAGGCACTGAAATTTTGACCGGTCAGATTGTAAATACCAACGCGCAATTTCTATCTGA
AAAATGTGCTGAATTGGGTATTGACGTCTATTTTCATACAGCAGTAGGCGATAATGAAAAGCGTCTTTTGTCGGTGTTGG
AGATTGCCAGCAAGCGAAGTGATATGGTCATTCTCTGTGGCGGTTTGGGACCGACGGAGGACGATTTGACCAAGCAGACC
TTGGCTCAGTTTTTAGGACGCGACTTGGTCTTTGACAAGAGGGCTGTGGACAAGCTGAACCGCTTTTTTGCCAGTCGTCC
CGGTCGTATTCGCACACCCAATAATGAGCGTCAGGCTCAATTGGTGGCTGGTTCTATTCCCTTGCACAATCCCACAGGGT
TGGCCGTAGGGAGTATGATTGAACAAGACGGCGTTACCTATATTGTCTTGCCAGGACCGCCTAGCGAACTCAAGGCCATG
TTTGCCCAGAGTTTGCTGCCGCTGTTGACCCAATCCGAGCAACAACTCTATTCGCGGGTCTTGCGGTTCTTTGGTATCGG
CGAGAGTCAGTTGGTTACTATCTTGGCAGACTTGATTGACCAACAGATGGACCCGACTCTAGCCCCTTATGCTAAAACGG
GGGAAGTCACCCTGCGCCTGTCTACCAAGGCGACCAGTCAGGCAGAGGCAGATGTCAAACTAACCCAGCTAGAAAAGACG
ATTCTGGAGCGAGATAATTTAGCAAAATACCTATATGCCTATGGTGAGGACAATAGTCTGGCTAAAACGGTTGCGGATTT
GCTGGTTGACAAGCAGCAAACCTTGTCCATTTTGGAGCAGGGAACGGGAGGTCAGTTGCAAGCGGAATTGAGCGCAACCA
TGACAGACCAGATGTATTTTAGCGGGGGTCAGGTCAGAGGTCAGGGTCCAATCAGCTCGGACAGCTTGGTGACAGAAGCC
AGTCAGTTGCGGAAGGAATTGGCGACAGATTTGACTCTGGCTGTTTCGGTGGCTGTCAAACCCCAATCGACTGTCGACAA
CGTCCTTGCCAAGGTCAGTCTGGTCTTGGTCAGCACCTCTGGGATTGTCCAAAAAGAAGTGGATTTAGGGGGCTATTCAT
GGCTCTATCTGCGTCAGTTAGCTTGCCTGCAGGCCTTAGACTTTGTACGAAATACTTTGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

78.117

100

0.781
  cinA Streptococcus mitis NCTC 12261

55.156

100

0.585
  cinA Streptococcus mutans UA159

55.718

100

0.583
  cinA Streptococcus pneumoniae R6

54.676

100

0.58
  cinA Streptococcus pneumoniae TIGR4

54.676

100

0.58
  cinA Streptococcus mitis SK321

54.676

100

0.58
  cinA Streptococcus pneumoniae Rx1

54.676

100

0.58
  cinA Streptococcus pneumoniae D39

54.436

100

0.578
  cinA Bacillus subtilis subsp. subtilis str. 168

47.231

78.117

0.369

Multiple sequence alignment