Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB2S62_RS00195 Genome accession   NZ_CP162100
Coordinates   40868..41983 (+) Length   371 a.a.
NCBI ID   WP_367989228.1    Uniprot ID   -
Organism   Vibrio sp. NTOU-M3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 35868..46983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2S62_RS00175 (AB2S62_14880) rsmB 36729..38006 (-) 1278 WP_367987737.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AB2S62_RS00180 (AB2S62_14885) fmt 38067..39029 (-) 963 WP_367987738.1 methionyl-tRNA formyltransferase -
  AB2S62_RS00185 (AB2S62_14890) def 39056..39577 (-) 522 WP_367987739.1 peptide deformylase -
  AB2S62_RS00190 (AB2S62_14895) - 39760..40863 (+) 1104 WP_374144790.1 LysM peptidoglycan-binding domain-containing protein -
  AB2S62_RS00195 (AB2S62_14900) dprA 40868..41983 (+) 1116 WP_367989228.1 DNA-processing protein DprA Machinery gene
  AB2S62_RS00200 (AB2S62_14905) - 41986..42462 (+) 477 WP_367987740.1 DUF494 family protein -
  AB2S62_RS00205 (AB2S62_14910) - 42477..43046 (+) 570 WP_367987741.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  AB2S62_RS00210 (AB2S62_14915) - 43107..44240 (-) 1134 WP_367987742.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AB2S62_RS00215 (AB2S62_14920) purE 44245..44730 (-) 486 WP_367987743.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AB2S62_RS00220 (AB2S62_14925) - 44932..45489 (+) 558 WP_367987744.1 L-threonylcarbamoyladenylate synthase -
  AB2S62_RS00225 (AB2S62_14930) hemF 45516..46433 (+) 918 WP_367987745.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40443.84 Da        Isoelectric Point: 7.6301

>NTDB_id=1024020 AB2S62_RS00195 WP_367989228.1 40868..41983(+) (dprA) [Vibrio sp. NTOU-M3]
MNQQELSAWLTLHFTPGLGPKTISKLRSANPLTKIVASNATILRSMGLKEKQIAFIHTQADALVTSALQWLDAMPDRHII
TLESPEYPPLLKQIPAAPPVLFVQGQIECLIQPQIGIVGSRNASIDGQQAATHFAVELVEQNMIVTSGLALGIDSFAHDG
ALRRQGKTIAVLGSGLNHIYPARHKKLAQRILENGALISEFHPDTKPRPENFPRRNRIISGLSMGVLVVEAAEKSGSLIT
ARYAAEQSREVFVVPGSIHNVMSRGSNLLIKQGACLVQNIEDILNEIDHLLEWSKSVTVPIQASLFEQIDSKEELPFPQL
LANVGSKATPVDILASRTHIPVQEVMMQLLELELLGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=1024020 AB2S62_RS00195 WP_367989228.1 40868..41983(+) (dprA) [Vibrio sp. NTOU-M3]
ATGAATCAGCAGGAGTTGAGCGCTTGGCTAACGTTACATTTTACCCCGGGACTTGGGCCTAAAACGATAAGCAAACTGCG
CAGCGCCAATCCATTAACAAAAATCGTGGCTTCTAATGCCACGATTTTGCGTTCTATGGGATTAAAAGAGAAGCAGATCG
CATTCATCCATACTCAAGCTGATGCGCTGGTGACATCAGCATTGCAATGGTTGGATGCTATGCCAGATCGCCACATCATC
ACACTTGAATCACCAGAATATCCACCGCTACTAAAACAAATTCCTGCTGCGCCACCAGTGTTGTTCGTTCAAGGACAAAT
AGAGTGTTTAATCCAGCCTCAAATTGGTATTGTCGGTAGCCGTAATGCCAGTATTGATGGTCAGCAAGCAGCAACCCACT
TTGCTGTAGAATTAGTTGAACAAAATATGATCGTGACCAGCGGTCTGGCGCTTGGGATTGATAGCTTTGCTCATGACGGT
GCATTGCGGCGCCAAGGTAAGACGATTGCTGTATTGGGATCTGGCCTTAATCATATTTATCCGGCACGACATAAAAAACT
TGCACAGCGTATTTTAGAAAACGGTGCGTTGATTTCTGAATTTCATCCCGATACCAAGCCTAGGCCAGAGAACTTTCCGC
GTCGCAATCGCATCATTAGTGGCTTGTCGATGGGTGTGCTGGTGGTAGAAGCGGCAGAAAAAAGTGGCTCGTTAATTACA
GCGCGCTATGCCGCAGAGCAAAGCCGAGAAGTGTTTGTGGTACCCGGGTCTATTCACAATGTGATGAGTCGAGGTAGTAA
CCTATTGATAAAACAAGGTGCTTGCCTCGTTCAGAATATTGAAGATATTTTAAATGAAATTGATCACCTGTTAGAGTGGT
CTAAATCAGTAACAGTGCCAATTCAAGCTTCACTTTTTGAACAAATTGATAGCAAAGAAGAATTGCCATTTCCTCAGCTG
TTAGCTAACGTAGGAAGTAAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCCATATACCTGTTCAAGAAGTCATGAT
GCAGCTCTTAGAGTTAGAGCTCTTAGGGCATGTTGTTGCAGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.703

99.73

0.625
  dprA Vibrio cholerae strain A1552

61.186

100

0.612
  dprA Glaesserella parasuis strain SC1401

47.872

100

0.485
  dprA Legionella pneumophila strain ERS1305867

42.818

97.574

0.418
  dprA Neisseria meningitidis MC58

38.035

100

0.407
  dprA Neisseria meningitidis strain C311

38.035

100

0.407
  dprA Acinetobacter baumannii D1279779

42.857

88.679

0.38
  dprA Haemophilus influenzae Rd KW20

50.362

74.394

0.375
  dprA Acinetobacter baumannii strain A118

45.424

79.515

0.361

Multiple sequence alignment