Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB2J53_RS09715 Genome accession   NZ_CP162020
Coordinates   1861115..1862365 (+) Length   416 a.a.
NCBI ID   WP_048008963.1    Uniprot ID   A0AA46SK90
Organism   Cytobacillus firmus strain A4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1856115..1867365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2J53_RS09690 (AB2J53_09690) - 1856951..1857673 (+) 723 WP_197214893.1 SDR family oxidoreductase -
  AB2J53_RS09695 (AB2J53_09695) - 1857789..1858046 (+) 258 WP_061791010.1 DUF3243 domain-containing protein -
  AB2J53_RS09700 (AB2J53_09700) - 1858280..1859071 (+) 792 WP_035330727.1 YmfK family protein -
  AB2J53_RS09705 (AB2J53_09705) - 1859093..1859998 (+) 906 WP_197214894.1 RodZ domain-containing protein -
  AB2J53_RS09710 (AB2J53_09710) pgsA 1860510..1861088 (+) 579 WP_035330725.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB2J53_RS09715 (AB2J53_09715) cinA 1861115..1862365 (+) 1251 WP_048008963.1 competence/damage-inducible protein A Machinery gene
  AB2J53_RS09720 (AB2J53_09720) recA 1862639..1863679 (+) 1041 WP_368298498.1 recombinase RecA Machinery gene
  AB2J53_RS09725 (AB2J53_09725) rny 1864049..1865611 (+) 1563 WP_048008961.1 ribonuclease Y -
  AB2J53_RS09730 (AB2J53_09730) - 1865741..1866538 (+) 798 WP_368298499.1 TIGR00282 family metallophosphoesterase -
  AB2J53_RS09735 (AB2J53_09735) spoVS 1866871..1867131 (+) 261 WP_009330666.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45354.94 Da        Isoelectric Point: 4.8718

>NTDB_id=1023620 AB2J53_RS09715 WP_048008963.1 1861115..1862365(+) (cinA) [Cytobacillus firmus strain A4]
MNAEIIAVGSELLLGQIVNTNARFLSRQLAELGINVFYHTVVGDNPKRLRSVIKIAESRSDLIVFTGGLGPTKDDLTKET
IARHLGKELVMDEQALESIQLYFKRTNREMTENNKKQALVLEDAQVLPNEHGMAPGMIADSGRHVFMLLPGPPNEMEPMF
LKHAFPALQSKLGTEDVIVSRVLHFFGIGEAMLETEIEDIIDAQSNPTIAPLASDGEVTLRVTAKHSQPNTAMMLINEAE
TKILERVGEYFYGYDDTSLMYELTKLIKESSMTISAAESLTGGMFQEEFTSIPGAGGLLKGGVVCYTNEVKAEVLKVRKE
TIDNDGVVSAQCAAELAENVASLTNADIGISFTGVAGPDELEGNPVGTVYIGIWIKGRPVQTEKLNLGGTRAANRVRTVK
YGCHFLIKALKETQNA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1023620 AB2J53_RS09715 WP_048008963.1 1861115..1862365(+) (cinA) [Cytobacillus firmus strain A4]
ATGAATGCTGAAATTATTGCTGTCGGGTCTGAGCTTTTGCTTGGACAAATCGTTAATACAAATGCCCGCTTTCTTTCCCG
GCAGCTTGCTGAACTGGGCATTAACGTTTTTTACCATACAGTGGTTGGAGATAACCCAAAGCGCCTGAGATCTGTGATCA
AAATAGCCGAAAGCCGTTCTGATTTGATCGTCTTCACGGGCGGCCTGGGACCGACAAAGGATGATTTAACAAAAGAAACG
ATTGCCCGGCATCTTGGCAAAGAGCTCGTCATGGACGAACAGGCGCTTGAATCTATACAGCTTTATTTTAAACGCACCAA
CAGAGAGATGACTGAGAATAATAAAAAACAGGCCCTGGTTCTTGAGGATGCACAGGTGCTTCCTAATGAGCATGGAATGG
CACCCGGAATGATTGCCGATAGTGGCCGGCATGTTTTCATGCTTCTTCCGGGGCCGCCAAACGAGATGGAGCCGATGTTC
CTTAAACATGCCTTTCCAGCCCTGCAATCCAAGCTGGGAACCGAGGATGTAATTGTTTCCCGGGTGCTGCACTTCTTCGG
GATTGGAGAAGCCATGCTGGAAACGGAGATTGAAGATATTATTGATGCTCAGAGCAATCCAACCATTGCCCCGCTTGCTT
CTGATGGGGAAGTTACTCTGAGGGTCACAGCAAAGCATAGTCAGCCTAACACGGCCATGATGCTGATTAATGAAGCTGAA
ACTAAAATTCTGGAGCGTGTCGGCGAATACTTCTATGGCTATGATGATACTTCCCTGATGTATGAGCTCACCAAGCTGAT
TAAGGAGAGCAGCATGACTATTTCGGCAGCGGAGAGTTTAACAGGCGGCATGTTTCAGGAAGAGTTTACATCCATTCCGG
GAGCCGGCGGACTTTTAAAGGGTGGAGTGGTCTGCTACACAAACGAAGTTAAGGCTGAAGTATTAAAAGTCCGCAAAGAA
ACGATTGATAACGACGGGGTTGTCAGTGCACAGTGTGCTGCCGAGCTTGCTGAGAATGTCGCAAGCCTTACAAATGCCGA
TATCGGTATCAGCTTCACAGGTGTTGCCGGTCCGGATGAATTGGAAGGCAACCCTGTCGGTACAGTATATATAGGCATTT
GGATAAAAGGAAGGCCGGTGCAGACCGAAAAGCTAAACCTTGGAGGTACCAGGGCAGCCAATCGGGTTCGTACAGTAAAA
TACGGCTGCCATTTTCTTATTAAAGCATTAAAAGAAACTCAGAACGCTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.976

98.558

0.601
  cinA Streptococcus mitis SK321

46.19

100

0.466
  cinA Streptococcus pneumoniae TIGR4

45.714

100

0.462
  cinA Streptococcus mitis NCTC 12261

45.714

100

0.462
  cinA Streptococcus pneumoniae Rx1

45.238

100

0.457
  cinA Streptococcus pneumoniae R6

45.238

100

0.457
  cinA Streptococcus pneumoniae D39

45

100

0.454
  cinA Streptococcus mutans UA159

45.107

100

0.454
  cinA Streptococcus suis isolate S10

38.677

94.471

0.365

Multiple sequence alignment