Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB1395_RS09850 Genome accession   NZ_CP161815
Coordinates   1944772..1946028 (-) Length   418 a.a.
NCBI ID   WP_218653790.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SS-15     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1939772..1951028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1395_RS09820 (AB1395_09820) - 1939802..1940308 (+) 507 WP_316606039.1 hypothetical protein -
  AB1395_RS09825 (AB1395_09825) - 1940320..1940577 (+) 258 WP_316606038.1 hypothetical protein -
  AB1395_RS09830 (AB1395_09830) dapD 1940839..1941537 (+) 699 WP_218653788.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  AB1395_RS09835 (AB1395_09835) - 1941592..1942722 (+) 1131 WP_367783367.1 N-acetyldiaminopimelate deacetylase -
  AB1395_RS09840 (AB1395_09840) spx 1942767..1943165 (-) 399 WP_026217660.1 transcriptional regulator Spx -
  AB1395_RS09845 (AB1395_09845) recA 1943486..1944628 (-) 1143 WP_104968718.1 recombinase RecA Machinery gene
  AB1395_RS09850 (AB1395_09850) cinA 1944772..1946028 (-) 1257 WP_218653790.1 competence/damage-inducible protein A Machinery gene
  AB1395_RS09855 (AB1395_09855) - 1946405..1946980 (+) 576 WP_218653791.1 helix-turn-helix domain-containing protein -
  AB1395_RS09860 (AB1395_09860) - 1947109..1947660 (-) 552 WP_218653792.1 DNA-3-methyladenine glycosylase I -
  AB1395_RS09865 (AB1395_09865) ruvA 1947696..1948289 (-) 594 WP_218653793.1 Holliday junction branch migration protein RuvA -
  AB1395_RS09870 (AB1395_09870) - 1948299..1949522 (-) 1224 WP_218653794.1 MFS transporter -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44470.80 Da        Isoelectric Point: 4.7242

>NTDB_id=1022613 AB1395_RS09850 WP_218653790.1 1944772..1946028(-) (cinA) [Streptococcus pluranimalium strain SS-15]
MKAELIAVGTEILTGQIVNTNAQYLSEKMAEIGIDVYYQTAVGDNEERLLSVIDMASKRSDLVILCGGLGPTEDDLTKQT
LAKYLGRNLVFDEKANQKLDQFFASRPKYSRTPNNERQAQMVEGSTPIQNITGLAVGGILTVDGVTYVVLPGPPSELKPM
VQEGLVPLLSTSGEQLYSRVLRFFGIGESQLVTVLAEMIEEQTDPTLAPYAKVGEVTLRLSTKAKNQQAADLKLDALEAQ
ILATPGLDNVPLKDHLYGYGEGNSLAQVTVDLLKASSKSVTAAESLTAGLFQSTIADFQGASEIFEGGFVTYSLAQKASI
LGISEADLKAHGVVSEFTARAMAEAARAKVGADFAISLTGVAGPDALEGQRVGTVFIGLASEAGVTVKKVQIGGRSRSDI
RYIAVLHALNMVRQALLA

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1022613 AB1395_RS09850 WP_218653790.1 1944772..1946028(-) (cinA) [Streptococcus pluranimalium strain SS-15]
ATGAAAGCAGAACTCATTGCAGTTGGAACAGAAATCTTAACCGGACAAATTGTTAACACCAATGCTCAGTATTTGTCAGA
AAAAATGGCAGAAATCGGTATTGATGTATACTATCAAACAGCCGTTGGGGATAATGAGGAGAGACTCCTGTCAGTCATCG
ATATGGCTAGTAAACGTAGCGATTTGGTTATTCTTTGTGGTGGCTTGGGACCGACAGAAGATGATTTGACTAAGCAAACA
TTGGCTAAATATTTGGGACGTAACTTAGTTTTTGATGAGAAAGCCAATCAGAAATTGGATCAATTCTTTGCGTCGCGTCC
GAAATACAGCCGCACGCCCAATAATGAACGTCAGGCTCAGATGGTGGAAGGCTCAACGCCTATTCAAAACATCACAGGAC
TTGCTGTTGGCGGTATCTTGACGGTTGATGGTGTGACTTATGTCGTTTTACCTGGTCCACCGAGCGAATTGAAGCCTATG
GTACAAGAAGGTTTGGTACCTCTCCTATCCACAAGTGGTGAACAGCTTTATTCCCGCGTTCTTCGCTTCTTTGGTATCGG
TGAAAGTCAGTTGGTGACGGTCTTAGCAGAGATGATTGAAGAGCAGACAGACCCAACGCTTGCTCCCTATGCCAAGGTTG
GTGAAGTGACCTTGAGGCTGTCAACCAAGGCGAAAAATCAACAAGCAGCTGATCTGAAGTTGGATGCACTAGAAGCGCAA
ATCTTAGCGACACCTGGTTTGGATAACGTGCCCCTAAAAGACCATTTGTATGGCTATGGTGAGGGAAATTCTTTAGCGCA
GGTGACGGTTGACTTGTTGAAGGCTTCTAGTAAGTCGGTTACAGCAGCAGAAAGTCTGACAGCAGGGCTCTTTCAGTCGA
CAATTGCTGATTTCCAAGGGGCGTCTGAGATTTTTGAAGGTGGCTTTGTGACTTACAGCTTAGCTCAAAAAGCTTCTATC
TTGGGGATTTCTGAGGCTGATTTAAAGGCGCATGGTGTAGTCAGTGAGTTTACGGCTAGAGCGATGGCTGAGGCTGCGCG
TGCCAAGGTTGGAGCAGATTTTGCGATTTCTCTAACAGGTGTGGCAGGTCCTGATGCGCTTGAGGGGCAACGAGTTGGTA
CAGTATTTATTGGTTTAGCTAGTGAAGCTGGTGTCACTGTTAAAAAAGTTCAAATTGGAGGTCGTAGTCGCTCAGATATT
CGCTACATTGCCGTATTACATGCTTTAAATATGGTTCGACAAGCATTGCTAGCATGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-242)

Competence-damaged protein (CinA)

(264-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

70.813

100

0.708
  cinA Streptococcus mutans UA159

69.617

100

0.696
  cinA Streptococcus mitis NCTC 12261

69.617

100

0.696
  cinA Streptococcus pneumoniae Rx1

69.617

100

0.696
  cinA Streptococcus pneumoniae R6

69.617

100

0.696
  cinA Streptococcus pneumoniae TIGR4

69.378

100

0.694
  cinA Streptococcus pneumoniae D39

69.378

100

0.694
  cinA Streptococcus suis isolate S10

55.769

99.522

0.555
  cinA Bacillus subtilis subsp. subtilis str. 168

43.78

100

0.438

Multiple sequence alignment