Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   AB1395_RS00750 Genome accession   NZ_CP161815
Coordinates   136087..137115 (+) Length   342 a.a.
NCBI ID   WP_367784195.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SS-15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 131087..142115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1395_RS00740 (AB1395_00740) - 134767..135147 (+) 381 WP_218653889.1 DUF1033 family protein -
  AB1395_RS00745 (AB1395_00745) comYA 135210..136163 (+) 954 WP_367783521.1 competence type IV pilus ATPase ComGA Machinery gene
  AB1395_RS00750 (AB1395_00750) comYB 136087..137115 (+) 1029 WP_367784195.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB1395_RS00755 (AB1395_00755) comYC 137116..137409 (+) 294 WP_367783523.1 competence type IV pilus major pilin ComGC Machinery gene
  AB1395_RS00760 (AB1395_00760) comGD 137390..137806 (+) 417 WP_278024843.1 competence type IV pilus minor pilin ComGD -
  AB1395_RS00765 (AB1395_00765) comGE 137778..138077 (+) 300 WP_367783525.1 competence type IV pilus minor pilin ComGE -
  AB1395_RS00770 (AB1395_00770) comYF 138055..138492 (+) 438 WP_367783527.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB1395_RS00775 (AB1395_00775) comGG 138470..138871 (+) 402 WP_367783529.1 competence type IV pilus minor pilin ComGG -
  AB1395_RS00780 (AB1395_00780) comYH 138914..139867 (+) 954 WP_218653896.1 class I SAM-dependent methyltransferase Machinery gene
  AB1395_RS00785 (AB1395_00785) - 139928..141118 (+) 1191 WP_316605957.1 acetate kinase -
  AB1395_RS00790 (AB1395_00790) - 141481..141678 (+) 198 WP_218653898.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 38873.22 Da        Isoelectric Point: 9.6648

>NTDB_id=1022568 AB1395_RS00750 WP_367784195.1 136087..137115(+) (comYB) [Streptococcus pluranimalium strain SS-15]
MSFLKQDISLRSRSKPRALALQKQVKIIQLFNTLLSSGFNLPETVDFLKRSQLIPDKQVQIMYETLLAGFGLPVLMKNLG
FSDTVVTQLSLAETHGNSQKTLSKIENYLRQVSSVKKKLVEVGSYPIVLLVFLVLIMLGLKHYLLPQLAEGNTATAILEY
FPQFFLGGLFLSAILIFLAVRMAPKVEALRLYRFLSSLPFLGSLIKVYLTAYYAREWGNLLGQGVEMTRVVSLMQEQESR
LFVSIGRDIQAALLAGQSFHAKVLEYPFFLKELSLIIEYGNAKGHLGQELEVFSEELWEQFFYRVNRAMQLVQPLIFVMV
ALMIVMIYAAMLLPMYQSMEVM

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=1022568 AB1395_RS00750 WP_367784195.1 136087..137115(+) (comYB) [Streptococcus pluranimalium strain SS-15]
TTGAGCTTTTTAAAGCAGGACATCTCACTGAGGAGCAGGTCAAAACCGAGAGCATTAGCGCTTCAAAAGCAGGTTAAAAT
CATTCAGCTCTTTAATACGCTCTTGTCTTCGGGCTTTAACTTACCTGAGACGGTTGATTTTCTAAAACGTAGTCAACTGA
TACCAGATAAACAGGTTCAAATCATGTATGAAACCTTGTTAGCTGGTTTTGGCTTACCGGTTTTGATGAAAAATTTGGGT
TTTTCAGATACGGTTGTAACGCAGCTATCTTTGGCAGAAACACATGGTAACAGTCAAAAGACTTTGTCTAAAATTGAAAA
TTATTTAAGACAGGTTAGTTCGGTTAAGAAAAAGCTGGTTGAAGTGGGATCTTACCCTATTGTGTTATTAGTTTTTTTGG
TTTTAATCATGCTGGGGCTAAAACATTATCTCTTGCCTCAGTTAGCTGAAGGTAATACAGCGACAGCCATTTTAGAATAT
TTTCCTCAGTTCTTTTTAGGTGGGCTGTTCTTAAGTGCAATCCTTATCTTTTTAGCTGTTAGGATGGCACCAAAGGTGGA
AGCACTGAGGCTTTATCGGTTTTTGAGTAGTCTCCCTTTTTTGGGCAGTCTTATCAAAGTTTATTTGACGGCTTATTATG
CACGTGAATGGGGAAATCTTTTGGGGCAGGGGGTTGAGATGACAAGGGTTGTGTCGCTCATGCAGGAACAGGAATCGCGA
CTGTTTGTAAGTATTGGTCGAGATATACAGGCGGCACTTTTAGCTGGTCAATCCTTTCATGCTAAGGTTTTAGAGTATCC
ATTCTTCTTGAAAGAGTTAAGTCTGATTATTGAGTATGGTAATGCCAAAGGGCATCTTGGTCAAGAGTTAGAAGTTTTCT
CTGAAGAGCTTTGGGAACAGTTTTTTTATCGTGTGAATAGGGCTATGCAGTTAGTTCAGCCCCTTATTTTTGTCATGGTT
GCCTTGATGATTGTGATGATCTACGCAGCTATGCTTCTACCAATGTATCAATCTATGGAGGTTATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(214-334)

Type II secretion system (T2SS), protein F (T2SSF)

(28-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

58.651

99.708

0.585
  comYB Streptococcus mutans UA159

58.651

99.708

0.585
  comYB Streptococcus gordonii str. Challis substr. CH1

53.561

100

0.55
  comGB/cglB Streptococcus mitis NCTC 12261

53.433

97.953

0.523
  comGB/cglB Streptococcus mitis SK321

53.134

97.953

0.52
  comGB/cglB Streptococcus pneumoniae Rx1

52.239

97.953

0.512
  comGB/cglB Streptococcus pneumoniae D39

52.239

97.953

0.512
  comGB/cglB Streptococcus pneumoniae R6

52.239

97.953

0.512
  comGB/cglB Streptococcus pneumoniae TIGR4

52.239

97.953

0.512
  comGB Lactococcus lactis subsp. cremoris KW2

47.774

98.538

0.471

Multiple sequence alignment