Detailed information NTG1022570

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: AB1395_RS00770
• Genome accession: NZ_CP161815
• Coordinates: 138055..138492 (+)
• Length: 145 a.a.
• NCBI ID: WP_367783527.1
• Uniprot ID: -
• Organism: Streptococcus pluranimalium strain SS-15
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 133055..143492

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1395_RS00740 (AB1395_00740)	-	134767..135147 (+)	381	WP_218653889.1	DUF1033 family protein	-
AB1395_RS00745 (AB1395_00745)	comYA	135210..136163 (+)	954	WP_367783521.1	competence type IV pilus ATPase ComGA	Machinery gene
AB1395_RS00750 (AB1395_00750)	comYB	136087..137115 (+)	1029	WP_367784195.1	competence type IV pilus assembly protein ComGB	Machinery gene
AB1395_RS00755 (AB1395_00755)	comYC	137116..137409 (+)	294	WP_367783523.1	competence type IV pilus major pilin ComGC	Machinery gene
AB1395_RS00760 (AB1395_00760)	comGD	137390..137806 (+)	417	WP_278024843.1	competence type IV pilus minor pilin ComGD	-
AB1395_RS00765 (AB1395_00765)	comGE	137778..138077 (+)	300	WP_367783525.1	competence type IV pilus minor pilin ComGE	-
AB1395_RS00770 (AB1395_00770)	comYF	138055..138492 (+)	438	WP_367783527.1	competence type IV pilus minor pilin ComGF	Machinery gene
AB1395_RS00775 (AB1395_00775)	comGG	138470..138871 (+)	402	WP_367783529.1	competence type IV pilus minor pilin ComGG	-
AB1395_RS00780 (AB1395_00780)	comYH	138914..139867 (+)	954	WP_218653896.1	class I SAM-dependent methyltransferase	Machinery gene
AB1395_RS00785 (AB1395_00785)	-	139928..141118 (+)	1191	WP_316605957.1	acetate kinase	-
AB1395_RS00790 (AB1395_00790)	-	141481..141678 (+)	198	WP_218653898.1	helix-turn-helix transcriptional regulator	-
AB1395_RS00795 (AB1395_00795)	-	141691..142143 (+)	453	WP_218653899.1	hypothetical protein	-
AB1395_RS00800 (AB1395_00800)	-	142177..142848 (+)	672	WP_218653900.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16929.63 Da
• Isoelectric Point: 10.2215

>NTDB_id=1022570 AB1395_RS00770 WP_367783527.1 138055..138492(+) (comYF) [Streptococcus pluranimalium strain SS-15]
MLKHYHLKAFTLMECLLALLVLSGSIQVYQAMTKVTSTHVRELSQHKDQDWLLFCQQFRSELAGSQLVKVSDDRLVILKN
TQTLAFGKSKKEDFRKTSGDGRGFQPMIYNIESAHFRRFNQTISVQFIFKDGRVREFLYAFKKET

Nucleotide

• Length: 438 bp

>NTDB_id=1022570 AB1395_RS00770 WP_367783527.1 138055..138492(+) (comYF) [Streptococcus pluranimalium strain SS-15]
GTGTTAAAACATTATCACCTTAAGGCATTCACCTTGATGGAGTGTTTGCTGGCATTACTGGTTCTATCGGGCTCCATACA
GGTATACCAAGCCATGACTAAGGTGACTTCAACTCATGTTCGAGAACTCAGCCAACATAAAGATCAGGACTGGTTGCTCT
TTTGCCAGCAATTTCGCTCAGAATTAGCAGGTTCTCAGTTGGTTAAAGTTTCTGATGATAGATTAGTCATCTTAAAAAAT
ACCCAAACCTTGGCTTTTGGTAAATCGAAAAAAGAGGATTTTCGTAAAACGAGCGGCGATGGTCGCGGCTTTCAACCTAT
GATTTATAACATAGAGTCAGCTCATTTTAGGCGGTTTAATCAGACCATCAGTGTTCAATTCATTTTTAAAGATGGAAGGG
TGCGTGAGTTTCTCTATGCTTTTAAAAAAGAGACTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (37-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA159	55.319	97.241	0.538
comYF	Streptococcus mutans UA140	54.61	97.241	0.531
comGF/cglF	Streptococcus mitis NCTC 12261	43.972	97.241	0.428
comGF/cglF	Streptococcus pneumoniae Rx1	43.662	97.931	0.428
comGF/cglF	Streptococcus pneumoniae D39	43.662	97.931	0.428
comGF/cglF	Streptococcus pneumoniae R6	43.662	97.931	0.428
comGF/cglF	Streptococcus pneumoniae TIGR4	43.662	97.931	0.428
comGF/cglF	Streptococcus mitis SK321	41.135	97.241	0.4