Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ABVF20_RS08610 Genome accession   NZ_CP160999
Coordinates   1979741..1980973 (-) Length   410 a.a.
NCBI ID   WP_100156468.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1974741..1985973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVF20_RS08575 (ABVF20_09455) - 1975287..1975535 (-) 249 WP_100140843.1 BolA family protein -
  ABVF20_RS08580 (ABVF20_09460) - 1975592..1976347 (-) 756 WP_100140882.1 ABC transporter permease -
  ABVF20_RS08585 (ABVF20_09465) - 1976350..1977267 (-) 918 WP_100156465.1 ABC transporter ATP-binding protein -
  ABVF20_RS08590 (ABVF20_09470) yacG 1977317..1977514 (-) 198 WP_267392005.1 DNA gyrase inhibitor YacG -
  ABVF20_RS08595 (ABVF20_09475) zapD 1977514..1978266 (-) 753 WP_100140881.1 cell division protein ZapD -
  ABVF20_RS08600 (ABVF20_09480) coaE 1978272..1978886 (-) 615 WP_267392006.1 dephospho-CoA kinase -
  ABVF20_RS08605 (ABVF20_09485) pilD 1978883..1979734 (-) 852 WP_367417839.1 A24 family peptidase Machinery gene
  ABVF20_RS08610 (ABVF20_09490) pilG 1979741..1980973 (-) 1233 WP_100156468.1 type II secretion system F family protein Machinery gene
  ABVF20_RS08615 (ABVF20_09495) pilF 1981020..1982699 (-) 1680 WP_267392008.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABVF20_RS08620 (ABVF20_09500) recJ 1982899..1984596 (-) 1698 WP_267392009.1 single-stranded-DNA-specific exonuclease RecJ -
  ABVF20_RS08625 (ABVF20_09505) - 1984593..1985567 (-) 975 WP_367577644.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45158.33 Da        Isoelectric Point: 9.9541

>NTDB_id=1022265 ABVF20_RS08610 WP_100156468.1 1979741..1980973(-) (pilG) [Snodgrassella alvi strain Acer07]
MNKPVAVSKAKSTGISYSFEGKNIKTEQIVRGEVVAKDEAEARAKLNRRQIRVIQINKVKKQRQKKISPADITVFTRQLS
TMMKSGLPMMQAFDIAAKGHSNPAMTQMLMQIRSDVEQGTSLADSFAKYPKYFDRFYCNLVRAGETGGVLEAILDKLAVY
KEKTQGIKKKVKSALTYPVVVVVVAIALVIVMMMFVLPSFGKVYEGMGVPLPGLTQFMMNISNFFVHFGVFIIIALIAGV
IGLIKWYQNSDDLKKRFDYMLLKMPIFGQIVRKATIARWARTTATLFAAGVPLVEVLDSVAGAAGNIKYEEATQEIRAKV
NQGISLTSAMQATELFPNMVMQMASIGEESGSLDDMLNKSAEFYEEDVDTAVSQLSSLMEPIIMVVLGLIVGVILVAMYL
PLFNIGNAVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1022265 ABVF20_RS08610 WP_100156468.1 1979741..1980973(-) (pilG) [Snodgrassella alvi strain Acer07]
ATGAACAAACCAGTAGCAGTATCCAAAGCTAAATCTACCGGCATCAGCTACAGCTTTGAAGGAAAAAACATCAAAACTGA
GCAGATTGTACGCGGCGAAGTAGTGGCAAAAGATGAGGCAGAAGCCCGTGCCAAACTTAACCGAAGACAGATTCGTGTAA
TTCAGATTAACAAAGTCAAAAAACAGCGTCAGAAAAAAATCAGTCCGGCGGATATAACAGTCTTTACTCGACAATTATCA
ACCATGATGAAATCCGGTTTACCGATGATGCAGGCTTTTGATATCGCAGCCAAAGGCCACTCAAACCCTGCTATGACCCA
AATGCTGATGCAAATCCGTTCTGATGTTGAGCAGGGTACATCATTAGCTGATTCTTTTGCCAAATATCCAAAGTATTTTG
ATCGATTTTATTGCAATCTGGTACGTGCAGGCGAAACAGGCGGTGTATTGGAAGCCATATTAGATAAACTGGCCGTATAC
AAAGAAAAAACTCAAGGAATTAAGAAAAAGGTTAAAAGTGCTTTGACCTATCCGGTAGTAGTGGTAGTTGTCGCAATTGC
ACTGGTAATCGTCATGATGATGTTCGTTTTACCATCATTCGGTAAAGTTTACGAAGGTATGGGCGTTCCTCTGCCAGGAC
TTACACAATTCATGATGAATATTTCTAATTTCTTTGTCCACTTTGGTGTATTTATTATCATTGCACTCATTGCAGGTGTA
ATTGGACTAATAAAATGGTATCAGAACTCAGATGATTTGAAAAAACGTTTTGATTATATGTTATTGAAAATGCCCATTTT
TGGCCAAATCGTACGTAAAGCCACAATTGCCCGCTGGGCGCGCACAACAGCAACCTTGTTTGCTGCCGGCGTCCCCTTAG
TAGAAGTACTTGACTCAGTTGCCGGAGCAGCGGGCAATATCAAATATGAAGAAGCGACACAGGAAATTCGGGCCAAGGTT
AATCAGGGTATCTCCCTCACCTCTGCCATGCAGGCTACTGAATTATTTCCCAATATGGTAATGCAAATGGCCTCTATTGG
CGAAGAGTCCGGATCACTTGATGATATGTTAAATAAATCAGCCGAATTTTATGAAGAAGATGTAGATACTGCTGTTTCAC
AGCTATCATCTTTGATGGAACCCATTATCATGGTAGTACTGGGTTTGATCGTCGGTGTTATTCTGGTTGCTATGTATTTA
CCACTCTTCAACATCGGTAATGCAGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

65.394

95.854

0.627
  pilG Neisseria meningitidis 44/76-A

64.631

95.854

0.62
  pilC Legionella pneumophila strain ERS1305867

47

97.561

0.459
  pilC Acinetobacter baumannii D1279779

43.609

97.317

0.424
  pilC Acinetobacter baylyi ADP1

42.965

97.073

0.417
  pilC Pseudomonas stutzeri DSM 10701

41.604

97.317

0.405
  pilC Vibrio cholerae strain A1552

38.557

98.049

0.378

Multiple sequence alignment