Detailed information NTG1022264

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABVF20_RS08605
• Genome accession: NZ_CP160999
• Coordinates: 1978883..1979734 (-)
• Length: 283 a.a.
• NCBI ID: WP_367417839.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer07
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1973883..1984734

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVF20_RS08570 (ABVF20_09450)	murA	1973987..1975243 (-)	1257	WP_369608784.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
ABVF20_RS08575 (ABVF20_09455)	-	1975287..1975535 (-)	249	WP_100140843.1	BolA family protein	-
ABVF20_RS08580 (ABVF20_09460)	-	1975592..1976347 (-)	756	WP_100140882.1	ABC transporter permease	-
ABVF20_RS08585 (ABVF20_09465)	-	1976350..1977267 (-)	918	WP_100156465.1	ABC transporter ATP-binding protein	-
ABVF20_RS08590 (ABVF20_09470)	yacG	1977317..1977514 (-)	198	WP_267392005.1	DNA gyrase inhibitor YacG	-
ABVF20_RS08595 (ABVF20_09475)	zapD	1977514..1978266 (-)	753	WP_100140881.1	cell division protein ZapD	-
ABVF20_RS08600 (ABVF20_09480)	coaE	1978272..1978886 (-)	615	WP_267392006.1	dephospho-CoA kinase	-
ABVF20_RS08605 (ABVF20_09485)	pilD	1978883..1979734 (-)	852	WP_367417839.1	A24 family peptidase	Machinery gene
ABVF20_RS08610 (ABVF20_09490)	pilG	1979741..1980973 (-)	1233	WP_100156468.1	type II secretion system F family protein	Machinery gene
ABVF20_RS08615 (ABVF20_09495)	pilF	1981020..1982699 (-)	1680	WP_267392008.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABVF20_RS08620 (ABVF20_09500)	recJ	1982899..1984596 (-)	1698	WP_267392009.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31181.17 Da
• Isoelectric Point: 7.9571

>NTDB_id=1022264 ABVF20_RS08605 WP_367417839.1 1978883..1979734(-) (pilD) [Snodgrassella alvi strain Acer07]
MLSDTLFFSIIALITGLAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAENFARFNLCVPPSACPHCQHKIRWWQNIPL
ISYLILHGRCAACAKPISPRYFCVELLTGLAFAAVVWRYDVTPVAAGGLVLTAALITLTFIDADTQLLPDQITLPLLWLG
LLFNWYSEFVSLSAAIWGAVAGYMSLWSLFWLFKLITGKDGMGYGDFKLLAALGAWMGAAALPLIVFIAAIVGIIASLIL
KVARSQPMAFGPALAISGWIVWMANSQISQLIHWWLQLSGFDA

Nucleotide

• Length: 852 bp

>NTDB_id=1022264 ABVF20_RS08605 WP_367417839.1 1978883..1979734(-) (pilD) [Snodgrassella alvi strain Acer07]
ATGTTATCAGATACACTGTTTTTCTCCATCATCGCATTAATAACAGGTTTAGCTGTAGGCAGCTTTCTGAACGTAGTCAT
CTACCGTCTGCCGATCATGATGGAACGCAGCTGGCAGGCTGAAGCACGAATGGCATTGCAATTACCGGCAGAAAATTTTG
CCCGTTTCAATCTTTGCGTACCCCCGTCAGCCTGCCCTCATTGCCAGCATAAAATTCGCTGGTGGCAAAATATACCATTG
ATAAGCTATCTTATCTTACATGGTCGTTGTGCTGCTTGTGCAAAACCGATTAGCCCTCGCTATTTCTGTGTTGAACTGCT
TACCGGACTAGCGTTTGCCGCAGTAGTATGGCGCTATGATGTAACACCGGTTGCCGCCGGTGGTCTGGTTTTGACAGCTG
CGTTGATAACATTAACATTTATCGATGCTGATACTCAGCTCTTGCCAGATCAGATTACTTTACCATTACTGTGGCTGGGA
TTACTGTTTAATTGGTATAGTGAATTTGTATCCTTATCTGCAGCTATATGGGGAGCAGTAGCAGGCTATATGAGCTTGTG
GTCACTGTTTTGGCTATTCAAGCTCATAACCGGAAAAGATGGCATGGGTTATGGTGATTTTAAACTGCTGGCTGCTCTAG
GCGCATGGATGGGTGCTGCTGCATTGCCATTAATTGTATTTATAGCTGCTATTGTTGGCATCATTGCCTCTTTGATACTC
AAAGTTGCCCGCAGTCAGCCAATGGCTTTTGGCCCGGCTCTAGCCATCTCCGGCTGGATTGTTTGGATGGCCAACAGCCA
AATTAGCCAGCTCATTCACTGGTGGTTGCAACTTTCTGGATTCGATGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (129-236)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	55.019	95.053	0.523
pilD	Acinetobacter baumannii D1279779	52.03	95.76	0.498
pilD	Acinetobacter nosocomialis M2	51.661	95.76	0.495
pilD	Vibrio cholerae strain A1552	49.097	97.88	0.481
pilD	Vibrio campbellii strain DS40M4	46.494	95.76	0.445