Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABVF20_RS04415 | Genome accession | NZ_CP160999 |
| Coordinates | 1017447..1017896 (-) | Length | 149 a.a. |
| NCBI ID | WP_323811348.1 | Uniprot ID | - |
| Organism | Snodgrassella alvi strain Acer07 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1012447..1022896
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABVF20_RS04400 (ABVF20_03610) | - | 1012549..1013001 (-) | 453 | WP_323811347.1 | pilin | - |
| ABVF20_RS04405 (ABVF20_14085) | - | 1013836..1015266 (-) | 1431 | WP_370389930.1 | sulfatase-like hydrolase/transferase | - |
| ABVF20_RS04410 (ABVF20_14090) | - | 1015828..1017258 (-) | 1431 | WP_370389247.1 | sulfatase-like hydrolase/transferase | - |
| ABVF20_RS04415 (ABVF20_14095) | pilA | 1017447..1017896 (-) | 450 | WP_323811348.1 | pilin | Machinery gene |
| ABVF20_RS04420 (ABVF20_03650) | - | 1018310..1018759 (-) | 450 | WP_367578414.1 | pilin | - |
| ABVF20_RS04425 (ABVF20_03655) | - | 1019009..1019812 (-) | 804 | WP_370388209.1 | hypothetical protein | - |
| ABVF20_RS04430 (ABVF20_14100) | - | 1020167..1022389 (+) | 2223 | WP_370388210.1 | FepA family TonB-dependent siderophore receptor | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15581.01 Da Isoelectric Point: 9.3024
>NTDB_id=1022256 ABVF20_RS04415 WP_323811348.1 1017447..1017896(-) (pilA) [Snodgrassella alvi strain Acer07]
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIVDNMQNNTCDSNNKAIDEQKGKYGTA
KIAGSVTMTSATSAMGDTGCTILYTVNSTGVSAAIKGKKLELSVLKNGSLKKSAAGTDMDEKYIPKAYL
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIVDNMQNNTCDSNNKAIDEQKGKYGTA
KIAGSVTMTSATSAMGDTGCTILYTVNSTGVSAAIKGKKLELSVLKNGSLKKSAAGTDMDEKYIPKAYL
Nucleotide
Download Length: 450 bp
>NTDB_id=1022256 ABVF20_RS04415 WP_323811348.1 1017447..1017896(-) (pilA) [Snodgrassella alvi strain Acer07]
ATGAAAGCATTCCAAAAAGGTTTTACATTAATCGAATTGATGATTGTTATTGCGATTATTGGTATTTTGGCAGCCATCGC
TGTACCTGCTTATTCTGACTATATCGCGCGCTCTCAAGCATCTGAAGCGTCTAGTCTGGCTGCCGGTTTGAAAACACAGA
TAGTAGATAACATGCAAAATAATACCTGTGATTCAAATAATAAAGCTATAGATGAGCAAAAAGGTAAATATGGTACTGCA
AAAATTGCAGGATCCGTAACAATGACCTCAGCTACTTCAGCCATGGGTGATACAGGTTGTACAATTCTGTATACTGTAAA
TAGTACCGGTGTTTCTGCTGCTATTAAAGGTAAAAAATTAGAATTGTCTGTGTTGAAAAATGGTTCATTAAAGAAATCAG
CAGCCGGTACAGATATGGATGAAAAATATATACCTAAAGCTTATTTATAA
ATGAAAGCATTCCAAAAAGGTTTTACATTAATCGAATTGATGATTGTTATTGCGATTATTGGTATTTTGGCAGCCATCGC
TGTACCTGCTTATTCTGACTATATCGCGCGCTCTCAAGCATCTGAAGCGTCTAGTCTGGCTGCCGGTTTGAAAACACAGA
TAGTAGATAACATGCAAAATAATACCTGTGATTCAAATAATAAAGCTATAGATGAGCAAAAAGGTAAATATGGTACTGCA
AAAATTGCAGGATCCGTAACAATGACCTCAGCTACTTCAGCCATGGGTGATACAGGTTGTACAATTCTGTATACTGTAAA
TAGTACCGGTGTTTCTGCTGCTATTAAAGGTAAAAAATTAGAATTGTCTGTGTTGAAAAATGGTTCATTAAAGAAATCAG
CAGCCGGTACAGATATGGATGAAAAATATATACCTAAAGCTTATTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter nosocomialis M2 |
48.322 |
100 |
0.483 |
| pilE | Neisseria gonorrhoeae MS11 |
38.462 |
100 |
0.436 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40 |
100 |
0.416 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
42.029 |
92.617 |
0.389 |
| pilA | Pseudomonas aeruginosa PAK |
37.013 |
100 |
0.383 |
| comP | Acinetobacter baylyi ADP1 |
37.333 |
100 |
0.376 |
| pilA2 | Legionella pneumophila str. Paris |
38.194 |
96.644 |
0.369 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.5 |
96.644 |
0.362 |