Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB0R67_RS18875 Genome accession   NZ_CP160237
Coordinates   3727141..3728379 (-) Length   412 a.a.
NCBI ID   WP_065229238.1    Uniprot ID   A0AAN6BA17
Organism   Bacillus thuringiensis strain JJ1216     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3722141..3733379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R67_RS18855 (AB0R67_18860) spoVS 3722549..3722809 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  AB0R67_RS18860 (AB0R67_18865) - 3722959..3723753 (-) 795 WP_001221097.1 TIGR00282 family metallophosphoesterase -
  AB0R67_RS18865 (AB0R67_18870) rny 3723916..3725481 (-) 1566 WP_000099769.1 ribonuclease Y -
  AB0R67_RS18870 (AB0R67_18875) recA 3725965..3726996 (-) 1032 WP_001283854.1 recombinase RecA Machinery gene
  AB0R67_RS18875 (AB0R67_18880) cinA 3727141..3728379 (-) 1239 WP_065229238.1 competence/damage-inducible protein A Machinery gene
  AB0R67_RS18880 (AB0R67_18885) pgsA 3728400..3728978 (-) 579 WP_001052977.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB0R67_RS18885 (AB0R67_18890) - 3729042..3729968 (-) 927 WP_061659878.1 helix-turn-helix domain-containing protein -
  AB0R67_RS18890 (AB0R67_18895) - 3729990..3730775 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  AB0R67_RS18895 (AB0R67_18900) - 3730914..3731162 (-) 249 WP_000114444.1 DUF3243 domain-containing protein -
  AB0R67_RS18900 (AB0R67_18905) - 3731238..3731951 (-) 714 WP_000759626.1 SDR family oxidoreductase -
  AB0R67_RS18905 (AB0R67_18910) - 3732052..3733338 (-) 1287 WP_000411277.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45481.82 Da        Isoelectric Point: 5.6841

>NTDB_id=1020383 AB0R67_RS18875 WP_065229238.1 3727141..3728379(-) (cinA) [Bacillus thuringiensis strain JJ1216]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IATSLDEKLVYDEKALDLISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDLLKADIGISFTGVAGPDASEQKEPGTVFVGLAIKGEQTAVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1020383 AB0R67_RS18875 WP_065229238.1 3727141..3728379(-) (cinA) [Bacillus thuringiensis strain JJ1216]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTGGCTTCAATTGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATCCTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCGACTAGTTTAGATGAAAAGCTTGTGTATGATGAAAAGGCATTAGACTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCGGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCACGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGCTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAATGCTGGTG
TTTCTTCTGTATTTAAGGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAGGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATTTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAGCCAGGAACAGTATTTGTTGGATTAGCGA
TTAAAGGTGAACAAACTGCAGTCTTTCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGATCAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.293

99.515

0.58
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

45.823

100

0.466
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

40.584

91.505

0.371

Multiple sequence alignment