Detailed information NTG1020302

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: AB0R69_RS02115
• Genome accession: NZ_CP160234
• Coordinates: 402544..403230 (-)
• Length: 228 a.a.
• NCBI ID: WP_335349256.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain JJ1368
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 397544..408230

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R69_RS02080 (AB0R69_02080)	fliW	397678..398112 (-)	435	WP_144523408.1	flagellar assembly protein FliW	-
AB0R69_RS02085 (AB0R69_02085)	-	398141..398719 (-)	579	WP_211063635.1	DUF6470 family protein	-
AB0R69_RS02090 (AB0R69_02090)	flgL	398768..399679 (-)	912	WP_144523410.1	flagellar hook-associated protein FlgL	-
AB0R69_RS02095 (AB0R69_02095)	flgK	399689..401209 (-)	1521	WP_144523411.1	flagellar hook-associated protein FlgK	-
AB0R69_RS02100 (AB0R69_02100)	-	401225..401707 (-)	483	WP_034660146.1	flagellar protein FlgN	-
AB0R69_RS02105 (AB0R69_02105)	flgM	401725..401988 (-)	264	WP_144523413.1	flagellar biosynthesis anti-sigma factor FlgM	-
AB0R69_RS02110 (AB0R69_02110)	-	402068..402487 (-)	420	WP_335349257.1	TIGR03826 family flagellar region protein	-
AB0R69_RS02115 (AB0R69_02115)	comFC	402544..403230 (-)	687	WP_335349256.1	ComF family protein	Machinery gene
AB0R69_RS02120 (AB0R69_02120)	-	403227..403520 (-)	294	WP_335349255.1	late competence development ComFB family protein	-
AB0R69_RS02125 (AB0R69_02125)	comFA	403587..404966 (-)	1380	WP_335349254.1	DEAD/DEAH box helicase	Machinery gene
AB0R69_RS02130 (AB0R69_02130)	-	405086..405928 (-)	843	WP_144523417.1	DegV family protein	-
AB0R69_RS02135 (AB0R69_02135)	degU	406146..406835 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
AB0R69_RS02140 (AB0R69_02140)	degS	406900..408075 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26052.52 Da
• Isoelectric Point: 10.0304

>NTDB_id=1020302 AB0R69_RS02115 WP_335349256.1 402544..403230(-) (comFC) [Bacillus pumilus strain JJ1368]
MICLICEGHFVASFTWKSLLLLNDDRLCIACKHHLEKIKRPICPACGRAQSNDQLCQDCSRWKERPDSTTVLVKNRSVYV
YNDLMKDVLSRFKFRGDTALAELFKHDAQAVFKRSFSMKEPVLIPIPLSKERQKERGFNQSVIIASLLGQPILQPLVKIH
QSKQSKKKKNERLDQKGMFQIKQIDAIVQRDIILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=1020302 AB0R69_RS02115 WP_335349256.1 402544..403230(-) (comFC) [Bacillus pumilus strain JJ1368]
TTGATTTGCCTAATTTGTGAAGGGCATTTTGTCGCTTCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCGTTT
ATGTATAGCATGTAAGCATCACTTAGAAAAAATTAAACGTCCAATTTGTCCAGCTTGTGGGAGAGCGCAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAACAGGTCTGTCTATGTT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACATGA
TGCCCAAGCGGTATTTAAGCGCTCCTTTTCAATGAAAGAACCTGTGCTGATCCCAATTCCTTTAAGTAAAGAAAGACAAA
AGGAAAGAGGATTTAATCAGTCCGTCATAATTGCGTCTTTGCTTGGTCAGCCGATTCTGCAGCCGCTTGTGAAAATACAT
CAAAGCAAACAGTCCAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCAAGCAGATAGATGCGAT
CGTTCAAAGGGATATTATCTTAATTGACGATATTTATACAACAGGGGCCACTATTTATGATGCGGCGAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCTTTTACGTTAATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (140-226)

• Double zinc ribbon domain (DZR_2) (3-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50.435	100	0.509
comFC/cflB	Streptococcus pneumoniae TIGR4	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae D39	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae R6	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae Rx1	39.301	100	0.395
comFC/cflB	Streptococcus mitis NCTC 12261	38.865	100	0.39
comFC/cflB	Streptococcus mitis SK321	38.865	100	0.39