Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB0R69_RS02125 Genome accession   NZ_CP160234
Coordinates   403587..404966 (-) Length   459 a.a.
NCBI ID   WP_335349254.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ1368     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 398587..409966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R69_RS02090 (AB0R69_02090) flgL 398768..399679 (-) 912 WP_144523410.1 flagellar hook-associated protein FlgL -
  AB0R69_RS02095 (AB0R69_02095) flgK 399689..401209 (-) 1521 WP_144523411.1 flagellar hook-associated protein FlgK -
  AB0R69_RS02100 (AB0R69_02100) - 401225..401707 (-) 483 WP_034660146.1 flagellar protein FlgN -
  AB0R69_RS02105 (AB0R69_02105) flgM 401725..401988 (-) 264 WP_144523413.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R69_RS02110 (AB0R69_02110) - 402068..402487 (-) 420 WP_335349257.1 TIGR03826 family flagellar region protein -
  AB0R69_RS02115 (AB0R69_02115) comFC 402544..403230 (-) 687 WP_335349256.1 ComF family protein Machinery gene
  AB0R69_RS02120 (AB0R69_02120) - 403227..403520 (-) 294 WP_335349255.1 late competence development ComFB family protein -
  AB0R69_RS02125 (AB0R69_02125) comFA 403587..404966 (-) 1380 WP_335349254.1 DEAD/DEAH box helicase Machinery gene
  AB0R69_RS02130 (AB0R69_02130) - 405086..405928 (-) 843 WP_144523417.1 DegV family protein -
  AB0R69_RS02135 (AB0R69_02135) degU 406146..406835 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AB0R69_RS02140 (AB0R69_02140) degS 406900..408075 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AB0R69_RS02145 (AB0R69_02145) - 408297..408965 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52261.12 Da        Isoelectric Point: 10.1409

>NTDB_id=1020303 AB0R69_RS02125 WP_335349254.1 403587..404966(-) (comFA) [Bacillus pumilus strain JJ1368]
MNMDKAMEIGKHLQSRHLLTAETRCLQSDLDWLEEKGLVIRTPAIERKANGLICSRCGVSKNQYFAHSPCDKCQKDCVYC
RSCIMMGKTKECGFLYEWTGPQIEETCDTELTWQGNLSKGQKRASEKLIEAIKSKSDLLIWAVCGAGKTEVLFHGIEYAL
RQGMSVCIATPRIDVVLELEPRLKKAFHGLNIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RFQFAVLKAVRKKGVKVYLSATPSKKMIRDVTGGQLQAIKIPLRFHQQPLPVPSFQWIGHWKKKLKKNQLSPTVMNWMQK
HITKKRRVLLFVPSISTMKKVTKVLRKHHLNVEGVSADDPDRKQKVQQFRDNKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFHFGLTRSMKQAKKHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1020303 AB0R69_RS02125 WP_335349254.1 403587..404966(-) (comFA) [Bacillus pumilus strain JJ1368]
TTGAACATGGATAAAGCAATGGAAATAGGGAAGCATCTTCAGTCACGCCACCTGCTTACCGCTGAAACAAGATGCTTACA
ATCTGATTTAGATTGGTTGGAGGAGAAAGGGTTAGTGATCCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTTATTT
GCAGCAGATGTGGTGTATCAAAAAATCAATACTTTGCCCACTCTCCTTGTGACAAGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCATGATGGGGAAAACAAAGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATAGAAGAAACATG
TGACACAGAATTAACATGGCAGGGAAACTTGTCTAAAGGACAAAAAAGAGCATCAGAAAAATTGATCGAAGCGATAAAAA
GCAAATCTGATTTACTCATCTGGGCAGTTTGCGGGGCAGGAAAAACAGAGGTGCTTTTTCACGGAATAGAATATGCCTTA
CGTCAAGGAATGAGCGTTTGCATTGCGACACCTAGAATTGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAGAAAGCATT
CCACGGACTGAACATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGCTAGTAATCGCTACAACTC
ACCAGTTGATGAGATATAAACATGCATTTGACGTGCTCATTATTGATGAAGTGGACGCTTTTCCTTATTCAATCGATGAA
CGCTTCCAATTTGCTGTTTTAAAGGCAGTGAGAAAGAAAGGGGTTAAGGTTTATTTAAGTGCGACGCCGTCTAAGAAAAT
GATAAGAGATGTAACAGGTGGACAACTACAAGCTATAAAAATTCCTCTTCGCTTTCACCAACAACCTTTACCGGTCCCAT
CCTTTCAATGGATTGGACATTGGAAGAAGAAATTAAAAAAGAACCAGCTTTCACCTACAGTAATGAATTGGATGCAGAAA
CATATTACAAAAAAGAGAAGGGTTTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAA
GCACCACTTAAATGTAGAAGGCGTGTCTGCTGATGATCCAGATAGGAAACAAAAGGTTCAGCAATTTAGAGATAACAAAT
ACGATGTACTAGTTACAACCACAATTCTAGAAAGAGGCGTAACCATTCCAAATGTGCAAGTGGGAGTACTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TTTCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCCGAAAAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.527

99.129

0.521

Multiple sequence alignment