Detailed information NTG1020305

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: AB0R69_RS02140
• Genome accession: NZ_CP160234
• Coordinates: 406900..408075 (-)
• Length: 391 a.a.
• NCBI ID: WP_003213166.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain JJ1368
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 401900..413075

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R69_RS02110 (AB0R69_02110)	-	402068..402487 (-)	420	WP_335349257.1	TIGR03826 family flagellar region protein	-
AB0R69_RS02115 (AB0R69_02115)	comFC	402544..403230 (-)	687	WP_335349256.1	ComF family protein	Machinery gene
AB0R69_RS02120 (AB0R69_02120)	-	403227..403520 (-)	294	WP_335349255.1	late competence development ComFB family protein	-
AB0R69_RS02125 (AB0R69_02125)	comFA	403587..404966 (-)	1380	WP_335349254.1	DEAD/DEAH box helicase	Machinery gene
AB0R69_RS02130 (AB0R69_02130)	-	405086..405928 (-)	843	WP_144523417.1	DegV family protein	-
AB0R69_RS02135 (AB0R69_02135)	degU	406146..406835 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
AB0R69_RS02140 (AB0R69_02140)	degS	406900..408075 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator
AB0R69_RS02145 (AB0R69_02145)	-	408297..408965 (+)	669	WP_012011434.1	YigZ family protein	-
AB0R69_RS02150 (AB0R69_02150)	-	408950..410041 (+)	1092	WP_335349253.1	LCP family protein	-
AB0R69_RS02155 (AB0R69_02155)	-	410168..411520 (-)	1353	WP_340992703.1	IS1182 family transposase	-
AB0R69_RS02160 (AB0R69_02160)	-	411652..412719 (-)	1068	WP_144523660.1	glycosyltransferase family 4 protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45523.25 Da
• Isoelectric Point: 5.8757

>NTDB_id=1020305 AB0R69_RS02140 WP_003213166.1 406900..408075(-) (degS) [Bacillus pumilus strain JJ1368]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=1020305 AB0R69_RS02140 WP_003213166.1 406900..408075(-) (degS) [Bacillus pumilus strain JJ1368]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTTGTAGAAGAGCTGAAGCAAATCAAGCAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCCGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGCGAGGCCTACGAAAAAGCACATAATCTGCAAGTGGAACTTACCATGAT
CCAGCAGCGCGAAAAGCAGCTGAGAGAAAGAAGAGATGATCTAGAAAGACGATTGTTAAGCCTACAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGTCAGATCACAGTTGTTCTCAACTACCTCAATCAGGACTTACGCCAAGTTGGCGTGTTACTC
GAAGATGCTCAGGCAAAACAAGATTTTGGACTTAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGGGTATCCCGTGA
AATTCATGACGGTCCGGCTCAGATGCTGGCAAACGTGATGATGCGATCCGAATTAATTGAACGGATTTTTAGAGACCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATCTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGGAAAACCAAGATCACGTTCCAATGCCTAGGAGATACAGAAAGTGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCACTAAAGCATTCCGAAGCTGAAGAAATCTCTGTGAAAGTAGAAGTG
ACGAAAGACTTTGTCACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTGGAAGGCAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATACGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841