Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB0R69_RS02135 Genome accession   NZ_CP160234
Coordinates   406146..406835 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain JJ1368     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 401146..411835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R69_RS02100 (AB0R69_02100) - 401225..401707 (-) 483 WP_034660146.1 flagellar protein FlgN -
  AB0R69_RS02105 (AB0R69_02105) flgM 401725..401988 (-) 264 WP_144523413.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R69_RS02110 (AB0R69_02110) - 402068..402487 (-) 420 WP_335349257.1 TIGR03826 family flagellar region protein -
  AB0R69_RS02115 (AB0R69_02115) comFC 402544..403230 (-) 687 WP_335349256.1 ComF family protein Machinery gene
  AB0R69_RS02120 (AB0R69_02120) - 403227..403520 (-) 294 WP_335349255.1 late competence development ComFB family protein -
  AB0R69_RS02125 (AB0R69_02125) comFA 403587..404966 (-) 1380 WP_335349254.1 DEAD/DEAH box helicase Machinery gene
  AB0R69_RS02130 (AB0R69_02130) - 405086..405928 (-) 843 WP_144523417.1 DegV family protein -
  AB0R69_RS02135 (AB0R69_02135) degU 406146..406835 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AB0R69_RS02140 (AB0R69_02140) degS 406900..408075 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AB0R69_RS02145 (AB0R69_02145) - 408297..408965 (+) 669 WP_012011434.1 YigZ family protein -
  AB0R69_RS02150 (AB0R69_02150) - 408950..410041 (+) 1092 WP_335349253.1 LCP family protein -
  AB0R69_RS02155 (AB0R69_02155) - 410168..411520 (-) 1353 WP_340992703.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1020304 AB0R69_RS02135 WP_008348273.1 406146..406835(-) (degU) [Bacillus pumilus strain JJ1368]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1020304 AB0R69_RS02135 WP_008348273.1 406146..406835(-) (degU) [Bacillus pumilus strain JJ1368]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAACTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCCGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCGCAGCATGAAGTGTATCCTGAAATTCGC
AGACCACTTCATATATTAACAAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGATCGTA
CACAAGCTGTTGTTGTCGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment