Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB0R77_RS08335 Genome accession   NZ_CP160226
Coordinates   1644243..1645493 (+) Length   416 a.a.
NCBI ID   WP_046311024.1    Uniprot ID   -
Organism   Bacillus safensis strain JJ1244     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1639243..1650493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R77_RS08310 (AB0R77_08310) - 1640663..1641394 (+) 732 WP_046311018.1 SDR family oxidoreductase -
  AB0R77_RS08315 (AB0R77_08315) - 1641468..1641725 (+) 258 WP_041109118.1 DUF3243 domain-containing protein -
  AB0R77_RS08320 (AB0R77_08320) - 1641857..1642648 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  AB0R77_RS08325 (AB0R77_08325) - 1642672..1643571 (+) 900 WP_046311020.1 helix-turn-helix domain-containing protein -
  AB0R77_RS08330 (AB0R77_08330) pgsA 1643645..1644226 (+) 582 WP_046311022.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB0R77_RS08335 (AB0R77_08335) cinA 1644243..1645493 (+) 1251 WP_046311024.1 competence/damage-inducible protein A Machinery gene
  AB0R77_RS08340 (AB0R77_08340) recA 1645671..1646714 (+) 1044 WP_034281901.1 recombinase RecA Machinery gene
  AB0R77_RS08345 (AB0R77_08345) rny 1647023..1648585 (+) 1563 WP_003211958.1 ribonuclease Y -
  AB0R77_RS08350 (AB0R77_08350) - 1648676..1649470 (+) 795 WP_024424109.1 TIGR00282 family metallophosphoesterase -
  AB0R77_RS08355 (AB0R77_08355) spoVS 1649673..1649933 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45624.65 Da        Isoelectric Point: 4.7478

>NTDB_id=1020050 AB0R77_RS08335 WP_046311024.1 1644243..1645493(+) (cinA) [Bacillus safensis strain JJ1244]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELILNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1020050 AB0R77_RS08335 WP_046311024.1 1644243..1645493(+) (cinA) [Bacillus safensis strain JJ1244]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGTTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCTGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACGATTGCGAGCACGCTTGGTAAAGAGCTTATACTAAATGAAGAAGCATTTGAATCAATTCAAGACTACTT
TCGAAAGACCGGCCGTGATATGTCACCAAACAACCGTAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTGAACC
GTTTCGGGATGGCCCCAGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAACTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAGCTTGGCTTAAAGGAAAAGATCGTGTCTGTTGTTCT
GCGCTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGACGCTCAAACGAATCCGACAATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTGGCACGGGTAGGTGAGTACTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
ATCCAAAGCCTTGCACGAGCACGGAAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGCGTGGTTTGTTATACAAACCAAGTCAAGCAGCAGGTACTTGGC
TGCCGGGAGGAAACATTGTCTTCCCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGAGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGACCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCTACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCGGGCATTCGAAAGCGT
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.181

99.76

0.75
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus mutans UA159

47.837

100

0.478
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.478
  cinA Streptococcus pneumoniae R6

47.268

100

0.478
  cinA Streptococcus pneumoniae D39

47.031

100

0.476
  cinA Streptococcus suis isolate S10

42.857

90.865

0.389

Multiple sequence alignment