Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ABX013_RS02340 Genome accession   NZ_CP160207
Coordinates   565140..566372 (-) Length   410 a.a.
NCBI ID   WP_084547381.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 560140..571372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX013_RS02305 (ABX013_11115) - 560688..560936 (-) 249 WP_025329856.1 BolA family protein -
  ABX013_RS02310 (ABX013_11110) - 560991..561752 (-) 762 WP_078475028.1 ABC transporter permease -
  ABX013_RS02315 (ABX013_11105) - 561749..562669 (-) 921 WP_025329858.1 ABC transporter ATP-binding protein -
  ABX013_RS02320 (ABX013_11100) yacG 562716..562913 (-) 198 WP_078475027.1 DNA gyrase inhibitor YacG -
  ABX013_RS02325 (ABX013_11095) zapD 562913..563665 (-) 753 WP_025329860.1 cell division protein ZapD -
  ABX013_RS02330 (ABX013_11085) coaE 563671..564285 (-) 615 WP_078475026.1 dephospho-CoA kinase -
  ABX013_RS02335 (ABX013_11080) pilD 564282..565133 (-) 852 WP_367449354.1 A24 family peptidase Machinery gene
  ABX013_RS02340 (ABX013_11075) pilG 565140..566372 (-) 1233 WP_084547381.1 type II secretion system F family protein Machinery gene
  ABX013_RS02345 (ABX013_11070) pilF 566419..568098 (-) 1680 WP_371751717.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABX013_RS02350 (ABX013_11065) recJ 568299..569996 (-) 1698 WP_371751718.1 single-stranded-DNA-specific exonuclease RecJ -
  ABX013_RS02355 (ABX013_11060) - 569993..570967 (-) 975 WP_369432851.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44959.82 Da        Isoelectric Point: 9.7594

>NTDB_id=1018877 ABX013_RS02340 WP_084547381.1 565140..566372(-) (pilG) [Snodgrassella alvi strain Amel04]
MNKPVAVSKTKSSGTSFSFEGKNLKTEQIVRGEVVAKDEADARAKLTRRQIRVIQIAKVKKQRQKKISQADITVFTRQLS
TMMKSGLPMMQAFDIAAKGHSNPAMTQLLLQIRSDVEQGTSLAESFAKHPKYFDHFYCNLVHAGEAGGVLEAILDKLSVY
KEKTQGIKKKVKSALTYPAVVVVVAIALVIVMMMFVLPSFGKVYEGMGVPLPGLTQFMMNISDFFVHYGVFVIIALIGGA
IGLFKWYQNSDDLKKRFDYMLLKMPIFGQIVRKATIARWSRTTATLFAAGVPLVEVLDSVAGASGNIRYEEATQEIRAKV
NQGISLTSAMQATELFPNMVMQMASIGEESGSLDDMLNKAAEFYEEDVDTAVAQLSSLMEPIIMVVLGGIVGIILVAMYL
PLFNIGNAVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1018877 ABX013_RS02340 WP_084547381.1 565140..566372(-) (pilG) [Snodgrassella alvi strain Amel04]
ATGAATAAACCCGTAGCAGTATCCAAAACCAAATCCTCCGGAACCAGTTTCAGTTTTGAAGGTAAAAATCTTAAAACTGA
ACAGATTGTACGCGGAGAAGTTGTCGCAAAAGACGAGGCTGATGCACGCGCCAAGCTAACCCGGCGTCAAATTCGTGTAA
TACAGATTGCCAAGGTCAAAAAACAGCGCCAAAAGAAAATCAGTCAGGCAGATATTACCGTCTTTACCCGGCAATTATCC
ACCATGATGAAATCCGGTCTGCCTATGATGCAGGCTTTCGATATTGCAGCCAAAGGCCATTCTAACCCGGCAATGACCCA
GCTACTGTTGCAAATCCGCTCTGATGTTGAGCAAGGTACATCTCTGGCAGAGTCTTTTGCCAAACATCCGAAATATTTCG
ATCATTTTTACTGTAATCTGGTGCATGCGGGTGAAGCCGGTGGTGTACTAGAGGCTATTCTTGACAAGCTGTCAGTATAT
AAAGAAAAAACTCAGGGTATCAAGAAAAAAGTTAAAAGTGCCTTGACCTACCCAGCTGTAGTTGTAGTTGTTGCAATTGC
ACTGGTAATCGTCATGATGATGTTCGTATTACCTTCATTCGGTAAAGTTTACGAGGGTATGGGCGTACCATTACCTGGTT
TAACTCAGTTCATGATGAATATTTCCGATTTCTTTGTACATTACGGCGTATTTGTCATCATCGCACTGATAGGTGGTGCA
ATTGGCTTATTTAAGTGGTATCAGAACTCAGATGATCTGAAAAAACGTTTTGATTATATGCTGTTAAAAATGCCTATTTT
CGGCCAAATCGTTCGTAAAGCCACCATTGCACGCTGGTCTCGTACAACAGCAACTCTATTTGCAGCAGGCGTACCATTGG
TAGAAGTTCTTGATTCAGTTGCCGGAGCTTCCGGTAATATTCGCTATGAAGAAGCTACTCAGGAAATCCGTGCCAAAGTT
AATCAGGGTATTTCTCTTACCTCAGCCATGCAGGCAACAGAGTTGTTTCCGAACATGGTGATGCAAATGGCGTCAATCGG
TGAAGAATCAGGTTCTTTGGATGACATGCTCAATAAGGCCGCAGAATTCTATGAAGAAGATGTAGATACTGCCGTTGCAC
AACTGTCTTCATTGATGGAACCGATTATTATGGTTGTACTCGGTGGTATTGTCGGGATAATTCTGGTTGCCATGTATTTA
CCGCTATTTAATATCGGTAATGCCGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria meningitidis 44/76-A

64.975

96.098

0.624
  pilG Neisseria gonorrhoeae MS11

64.885

95.854

0.622
  pilC Legionella pneumophila strain ERS1305867

48.12

97.317

0.468
  pilC Acinetobacter baylyi ADP1

44.11

97.317

0.429
  pilC Acinetobacter baumannii D1279779

44.11

97.317

0.429
  pilC Pseudomonas stutzeri DSM 10701

42.105

97.317

0.41
  pilC Vibrio cholerae strain A1552

38.308

98.049

0.376

Multiple sequence alignment