Detailed information NTG1018876

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABX013_RS02335
• Genome accession: NZ_CP160207
• Coordinates: 564282..565133 (-)
• Length: 283 a.a.
• NCBI ID: WP_367449354.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel04
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 559282..570133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX013_RS02300 (ABX013_11120)	murA	559389..560648 (-)	1260	WP_084547387.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
ABX013_RS02305 (ABX013_11115)	-	560688..560936 (-)	249	WP_025329856.1	BolA family protein	-
ABX013_RS02310 (ABX013_11110)	-	560991..561752 (-)	762	WP_078475028.1	ABC transporter permease	-
ABX013_RS02315 (ABX013_11105)	-	561749..562669 (-)	921	WP_025329858.1	ABC transporter ATP-binding protein	-
ABX013_RS02320 (ABX013_11100)	yacG	562716..562913 (-)	198	WP_078475027.1	DNA gyrase inhibitor YacG	-
ABX013_RS02325 (ABX013_11095)	zapD	562913..563665 (-)	753	WP_025329860.1	cell division protein ZapD	-
ABX013_RS02330 (ABX013_11085)	coaE	563671..564285 (-)	615	WP_078475026.1	dephospho-CoA kinase	-
ABX013_RS02335 (ABX013_11080)	pilD	564282..565133 (-)	852	WP_367449354.1	A24 family peptidase	Machinery gene
ABX013_RS02340 (ABX013_11075)	pilG	565140..566372 (-)	1233	WP_084547381.1	type II secretion system F family protein	Machinery gene
ABX013_RS02345 (ABX013_11070)	pilF	566419..568098 (-)	1680	WP_371751717.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABX013_RS02350 (ABX013_11065)	recJ	568299..569996 (-)	1698	WP_371751718.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31311.27 Da
• Isoelectric Point: 8.2935

>NTDB_id=1018876 ABX013_RS02335 WP_367449354.1 564282..565133(-) (pilD) [Snodgrassella alvi strain Amel04]
MLTDTLFFSVIALISGCAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAEHTSRFNLCVPHSACPYCQHKIRWWQNIPL
VSYILLRGRCASCSASISPRYFCVELLTGIAFAAVVWRYDVTPVAAGGLILTAALIALTFIDAETQLLPDQITLPLLWLG
LLFNWYCEFVPLASAVWGAALGYLSLWSLFWLFKLLTGKDGMGYGDFKLLAALGAWMGASALPLIVFMAAIVGIIASLVL
RVARSQPMAFGPALAIAGWIVWMTNSQINQLIHWWLRLSGFST

Nucleotide

• Length: 852 bp

>NTDB_id=1018876 ABX013_RS02335 WP_367449354.1 564282..565133(-) (pilD) [Snodgrassella alvi strain Amel04]
ATGTTAACTGATACTCTGTTTTTTAGCGTCATTGCATTAATATCGGGATGTGCTGTTGGCAGTTTTCTGAATGTAGTGAT
CTATCGTTTACCCATTATGATGGAACGAAGCTGGCAGGCAGAAGCACGAATGGCATTGCAACTGCCTGCAGAACACACCA
GTCGCTTTAATCTCTGTGTTCCGCATTCAGCCTGCCCGTACTGTCAGCATAAAATCCGCTGGTGGCAGAACATACCTCTT
GTCAGTTATATACTACTACGCGGACGCTGTGCTTCATGTTCAGCATCCATCAGCCCGCGCTATTTTTGTGTGGAATTATT
AACCGGTATTGCATTTGCTGCAGTAGTCTGGCGTTATGATGTCACACCTGTTGCTGCGGGCGGTCTGATACTGACTGCAG
CACTGATTGCACTGACCTTTATAGATGCCGAAACCCAGCTGTTGCCTGACCAAATCACCTTACCTCTACTCTGGCTGGGT
TTACTGTTTAACTGGTATTGTGAATTTGTTCCCTTAGCTTCTGCTGTCTGGGGTGCTGCGTTGGGCTATCTGAGTTTGTG
GTCACTTTTCTGGTTATTCAAACTACTGACCGGTAAAGATGGTATGGGTTATGGTGATTTTAAACTACTGGCTGCCCTTG
GTGCGTGGATGGGTGCTTCTGCATTGCCTTTAATTGTATTTATGGCAGCAATTGTCGGTATTATTGCTTCACTTGTTCTC
AGAGTTGCCCGCAGCCAGCCTATGGCTTTTGGTCCGGCACTGGCCATTGCAGGCTGGATTGTGTGGATGACAAACAGTCA
GATTAATCAGTTGATTCACTGGTGGCTGCGTCTTTCCGGGTTTAGTACATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-119)

• Type IV leader peptidase family (Peptidase_A24) (130-236)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	56.716	94.7	0.537
pilD	Acinetobacter baumannii D1279779	50.554	95.76	0.484
pilD	Acinetobacter nosocomialis M2	50.185	95.76	0.481
pilD	Vibrio cholerae strain A1552	48.921	98.233	0.481
pilD	Vibrio campbellii strain DS40M4	46.494	95.76	0.445