Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   DQM36_RS06565 Genome accession   NZ_LS483332
Coordinates   1275794..1275976 (-) Length   60 a.a.
NCBI ID   WP_011017399.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12696     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1270794..1280976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM36_RS06545 (NCTC12696_01286) gpsB 1271746..1272072 (-) 327 WP_002983626.1 cell division regulator GpsB -
  DQM36_RS06550 (NCTC12696_01287) - 1272194..1272709 (-) 516 WP_011285056.1 DUF1273 domain-containing protein -
  DQM36_RS06555 (NCTC12696_01288) recU 1272790..1273398 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  DQM36_RS06560 (NCTC12696_01289) pbp1a 1273385..1275550 (+) 2166 WP_023609908.1 penicillin-binding protein PBP1A -
  DQM36_RS06565 (NCTC12696_01291) prx 1275794..1275976 (-) 183 WP_011017399.1 hypothetical protein Regulator
  DQM36_RS06570 (NCTC12696_01292) speA 1276197..1276952 (+) 756 WP_009880239.1 streptococcal pyrogenic exotoxin SpeA -
  DQM36_RS06575 (NCTC12696_01293) - 1277074..1278291 (-) 1218 WP_023611377.1 peptidoglycan amidohydrolase family protein -
  DQM36_RS06580 (NCTC12696_01295) - 1278410..1278637 (-) 228 WP_003058873.1 phage holin -
  DQM36_RS06585 (NCTC12696_01296) - 1278634..1278906 (-) 273 WP_011017397.1 hypothetical protein -
  DQM36_RS06590 (NCTC12696_01297) - 1278918..1279550 (-) 633 WP_023611372.1 hypothetical protein -
  DQM36_RS06595 (NCTC12696_01298) - 1279553..1279981 (-) 429 WP_002988448.1 DUF1617 family protein -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6989.07 Da        Isoelectric Point: 4.3094

>NTDB_id=1017903 DQM36_RS06565 WP_011017399.1 1275794..1275976(-) (prx) [Streptococcus pyogenes strain NCTC12696]
MLYIDEFKEAIDKGYILGDTVAIVRKNGKIFDYVLPGEGVRPWEVLTEEKVEEVMRELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=1017903 DQM36_RS06565 WP_011017399.1 1275794..1275976(-) (prx) [Streptococcus pyogenes strain NCTC12696]
ATGTTATATATAGATGAGTTTAAAGAAGCGATTGATAAGGGGTATATTTTAGGTGACACAGTAGCGATAGTGCGTAAAAA
CGGAAAGATATTTGATTATGTGTTACCAGGAGAGGGAGTCAGGCCATGGGAGGTGTTGACAGAGGAAAAAGTGGAAGAAG
TGATGAGGGAATTAGACAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

78.333

100

0.783
  prx Streptococcus pyogenes MGAS315

75

100

0.75
  prx Streptococcus pyogenes MGAS315

71.667

100

0.717
  prx Streptococcus pyogenes MGAS8232

70

100

0.7
  prx Streptococcus pyogenes MGAS315

95.122

68.333

0.65
  prx Streptococcus pyogenes MGAS315

65

100

0.65
  prx Streptococcus pyogenes MGAS315

75.61

68.333

0.517