Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DQM36_RS06555 Genome accession   NZ_LS483332
Coordinates   1272790..1273398 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain NCTC12696     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1267790..1278398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM36_RS06525 (NCTC12696_01282) - 1268037..1268519 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  DQM36_RS06530 (NCTC12696_01283) - 1268664..1270133 (-) 1470 WP_038432430.1 cell division site-positioning protein MapZ family protein -
  DQM36_RS06535 (NCTC12696_01284) - 1270147..1271301 (-) 1155 WP_011888664.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  DQM36_RS06545 (NCTC12696_01286) gpsB 1271746..1272072 (-) 327 WP_002983626.1 cell division regulator GpsB -
  DQM36_RS06550 (NCTC12696_01287) - 1272194..1272709 (-) 516 WP_011285056.1 DUF1273 domain-containing protein -
  DQM36_RS06555 (NCTC12696_01288) recU 1272790..1273398 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  DQM36_RS06560 (NCTC12696_01289) pbp1a 1273385..1275550 (+) 2166 WP_023609908.1 penicillin-binding protein PBP1A -
  DQM36_RS06565 (NCTC12696_01291) prx 1275794..1275976 (-) 183 WP_011017399.1 hypothetical protein Regulator
  DQM36_RS06570 (NCTC12696_01292) speA 1276197..1276952 (+) 756 WP_009880239.1 streptococcal pyrogenic exotoxin SpeA -
  DQM36_RS06575 (NCTC12696_01293) - 1277074..1278291 (-) 1218 WP_023611377.1 peptidoglycan amidohydrolase family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=1017902 DQM36_RS06555 WP_002983622.1 1272790..1273398(+) (recU) [Streptococcus pyogenes strain NCTC12696]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1017902 DQM36_RS06555 WP_002983622.1 1272790..1273398(+) (recU) [Streptococcus pyogenes strain NCTC12696]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5