Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ABX042_RS06380 Genome accession   NZ_CP160076
Coordinates   1422354..1423586 (+) Length   410 a.a.
NCBI ID   WP_367454586.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1417354..1428586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX042_RS06365 (ABX042_12310) - 1417756..1418730 (+) 975 WP_367454584.1 hypothetical protein -
  ABX042_RS06370 (ABX042_12315) recJ 1418727..1420424 (+) 1698 WP_370578623.1 single-stranded-DNA-specific exonuclease RecJ -
  ABX042_RS06375 (ABX042_12320) pilF 1420626..1422305 (+) 1680 WP_084547380.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABX042_RS06380 (ABX042_12325) pilG 1422354..1423586 (+) 1233 WP_367454586.1 type II secretion system F family protein Machinery gene
  ABX042_RS06385 (ABX042_12330) pilD 1423593..1424444 (+) 852 WP_198210315.1 A24 family peptidase Machinery gene
  ABX042_RS06390 (ABX042_12335) coaE 1424441..1425055 (+) 615 WP_084551530.1 dephospho-CoA kinase -
  ABX042_RS06395 (ABX042_12340) zapD 1425061..1425813 (+) 753 WP_025329860.1 cell division protein ZapD -
  ABX042_RS06400 (ABX042_12345) yacG 1425813..1426010 (+) 198 WP_025329859.1 DNA gyrase inhibitor YacG -
  ABX042_RS06405 (ABX042_12350) - 1426057..1426977 (+) 921 WP_198210313.1 ABC transporter ATP-binding protein -
  ABX042_RS06410 (ABX042_12355) - 1426974..1427735 (+) 762 WP_370578624.1 ABC transporter permease -
  ABX042_RS06415 (ABX042_12365) - 1427790..1428038 (+) 249 WP_025329856.1 BolA family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45036.92 Da        Isoelectric Point: 9.8445

>NTDB_id=1017692 ABX042_RS06380 WP_367454586.1 1422354..1423586(+) (pilG) [Snodgrassella alvi strain Amel01]
MNKPVAVSKTKSSGTSFSFEGKNLKTEQIVRGEVVAKDEADARAKLTRRQIRVIQIAKVKKQRQKKISQADITVFTRQLS
TMMKSGLPMMQAFDIAAKGHSNPAMTQLLMQIRSDVEQGTSLAESFSKHPKYFDHFYCNLVHAGEAGGVLEAILDKLSVY
KEKTQGIKKKVKSALTYPAVVVVVAIALVIVMMMFVLPSFGKVYESMGVPLPGLTQFMMNISNFFVHYGIFVIIALIGGA
IGLFKWYQNSDDLKKRFDYMLLKMPIFGQIVRKATIARWSRTTATLFAAGVPLVEVLDSVAGASGNIRYEEATQEIRAKV
NQGISLTSAMQATELFPNMVMQMASIGEESGSLDDMLNKAAEFYEEDVDTAVAQLSSLMEPIIMVVLGGIVGIILVAMYL
PLFNIGNAVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1017692 ABX042_RS06380 WP_367454586.1 1422354..1423586(+) (pilG) [Snodgrassella alvi strain Amel01]
ATGAATAAACCCGTAGCAGTATCCAAAACCAAATCCTCCGGAACCAGTTTCAGTTTTGAAGGCAAAAACCTTAAAACTGA
ACAGATTGTACGCGGAGAAGTTGTCGCGAAAGACGAGGCTGATGCACGCGCCAAGCTAACCCGGCGTCAAATTCGTGTAA
TACAGATTGCCAAGGTCAAAAAACAGCGCCAAAAGAAAATTAGTCAGGCAGATATTACCGTCTTTACCCGACAATTATCC
ACCATGATGAAATCCGGTCTACCTATGATGCAGGCTTTCGATATTGCAGCCAAAGGTCATTCTAACCCTGCAATGACCCA
GCTATTGATGCAAATCCGCTCTGATGTTGAGCAAGGTACATCTCTGGCAGAGTCTTTTTCTAAACATCCAAAATATTTCG
ATCATTTTTACTGTAATCTGGTGCATGCAGGTGAAGCCGGTGGTGTACTAGAGGCTATTCTTGACAAGCTGTCGGTATAT
AAAGAAAAAACTCAGGGTATCAAGAAAAAAGTTAAAAGTGCCTTGACCTACCCAGCTGTGGTAGTAGTCGTAGCAATCGC
ACTGGTAATCGTCATGATGATGTTCGTATTACCTTCATTTGGTAAAGTTTACGAGAGTATGGGCGTACCATTACCTGGTT
TGACTCAGTTCATGATGAATATTTCCAATTTCTTTGTACATTACGGCATATTTGTCATCATCGCACTGATAGGTGGTGCA
ATTGGCTTATTTAAGTGGTATCAGAACTCAGATGATCTGAAAAAACGTTTTGATTATATGCTGTTAAAAATGCCTATTTT
CGGCCAAATCGTTCGTAAAGCCACCATTGCACGCTGGTCTCGTACAACAGCAACTCTATTTGCAGCAGGCGTACCATTGG
TAGAAGTTCTTGATTCAGTTGCCGGAGCTTCCGGTAATATTCGCTATGAAGAAGCTACTCAGGAAATCCGTGCCAAAGTT
AATCAGGGTATTTCTCTTACCTCAGCCATGCAGGCAACAGAGTTGTTTCCGAACATGGTGATGCAAATGGCTTCAATCGG
TGAAGAATCAGGTTCTTTGGATGACATGCTCAATAAAGCCGCAGAATTCTATGAAGAAGATGTAGATACTGCCGTTGCAC
AACTGTCTTCATTGATGGAACCGATTATTATGGTTGTACTTGGTGGTATTGTCGGGATAATTCTGGTTGCCATGTATTTA
CCGCTATTTAATATCGGTAATGCTGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria meningitidis 44/76-A

65.228

96.098

0.627
  pilG Neisseria gonorrhoeae MS11

65.14

95.854

0.624
  pilC Legionella pneumophila strain ERS1305867

47.87

97.317

0.466
  pilC Acinetobacter baylyi ADP1

44.361

97.317

0.432
  pilC Acinetobacter baumannii D1279779

44.11

97.317

0.429
  pilC Pseudomonas stutzeri DSM 10701

42.105

97.317

0.41
  pilC Vibrio cholerae strain A1552

38.06

98.049

0.373

Multiple sequence alignment