Detailed information NTG1017693

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABX042_RS06385
• Genome accession: NZ_CP160076
• Coordinates: 1423593..1424444 (+)
• Length: 283 a.a.
• NCBI ID: WP_198210315.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1418593..1429444

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX042_RS06370 (ABX042_12315)	recJ	1418727..1420424 (+)	1698	WP_370578623.1	single-stranded-DNA-specific exonuclease RecJ	-
ABX042_RS06375 (ABX042_12320)	pilF	1420626..1422305 (+)	1680	WP_084547380.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABX042_RS06380 (ABX042_12325)	pilG	1422354..1423586 (+)	1233	WP_367454586.1	type II secretion system F family protein	Machinery gene
ABX042_RS06385 (ABX042_12330)	pilD	1423593..1424444 (+)	852	WP_198210315.1	A24 family peptidase	Machinery gene
ABX042_RS06390 (ABX042_12335)	coaE	1424441..1425055 (+)	615	WP_084551530.1	dephospho-CoA kinase	-
ABX042_RS06395 (ABX042_12340)	zapD	1425061..1425813 (+)	753	WP_025329860.1	cell division protein ZapD	-
ABX042_RS06400 (ABX042_12345)	yacG	1425813..1426010 (+)	198	WP_025329859.1	DNA gyrase inhibitor YacG	-
ABX042_RS06405 (ABX042_12350)	-	1426057..1426977 (+)	921	WP_198210313.1	ABC transporter ATP-binding protein	-
ABX042_RS06410 (ABX042_12355)	-	1426974..1427735 (+)	762	WP_370578624.1	ABC transporter permease	-
ABX042_RS06415 (ABX042_12365)	-	1427790..1428038 (+)	249	WP_025329856.1	BolA family protein	-
ABX042_RS06420 (ABX042_12370)	murA	1428078..1429337 (+)	1260	WP_084547387.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31320.28 Da
• Isoelectric Point: 8.0909

>NTDB_id=1017693 ABX042_RS06385 WP_198210315.1 1423593..1424444(+) (pilD) [Snodgrassella alvi strain Amel01]
MLTDTLFFSVIALISGCAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAEHTSHFNLCVPHSACPYCQHKIRWWQNIPL
VSYILLRGRCASCSASISPRYFCVELLTGIAFAAVVWRYDVTPIAAGGLILTAALIALTFIDAETQLLPDQITLPLLWLG
LLFNWYCEFVPLASAVWGAALGYLSLWSLFWLFKLLTGKDGMGYGDFKLLAALGAWMGASALPLIVFMAAIVGIIASLIL
RVARSQPMAFGPALAIAGWIVWMTNSQINQLIHWWLRLSGFST

Nucleotide

• Length: 852 bp

>NTDB_id=1017693 ABX042_RS06385 WP_198210315.1 1423593..1424444(+) (pilD) [Snodgrassella alvi strain Amel01]
ATGTTAACTGATACTCTGTTTTTTAGCGTCATTGCATTAATATCGGGATGTGCTGTTGGCAGTTTTCTGAATGTAGTGAT
CTATCGTTTACCCATTATGATGGAACGAAGCTGGCAGGCAGAAGCACGAATGGCATTGCAACTGCCTGCAGAACACACCA
GTCACTTTAATCTCTGTGTTCCGCATTCAGCCTGCCCGTACTGTCAGCATAAAATCCGCTGGTGGCAGAATATACCTCTT
GTCAGTTATATACTGCTACGCGGACGCTGTGCTTCATGTTCAGCATCCATCAGCCCACGCTATTTTTGCGTGGAATTATT
AACCGGTATTGCATTTGCTGCAGTAGTCTGGCGTTATGATGTCACACCTATTGCTGCGGGCGGTCTGATACTGACTGCCG
CACTGATTGCACTGACCTTTATAGATGCCGAAACCCAGCTGTTACCTGACCAAATCACCTTACCTCTACTCTGGCTGGGT
TTACTGTTTAACTGGTATTGTGAATTTGTTCCCTTAGCTTCTGCTGTCTGGGGTGCTGCATTAGGCTATCTGAGCTTGTG
GTCACTTTTCTGGTTATTCAAACTACTAACCGGTAAAGATGGTATGGGTTATGGTGATTTTAAACTACTGGCTGCCCTTG
GTGCGTGGATGGGTGCTTCTGCATTGCCTTTAATTGTATTTATGGCAGCAATTGTCGGTATTATTGCTTCACTTATTCTC
AGAGTTGCCCGCAGCCAGCCTATGGCTTTTGGTCCGGCACTGGCCATTGCAGGCTGGATTGTGTGGATGACAAACAGTCA
GATTAATCAGTTGATTCACTGGTGGCTGCGTCTTTCCGGGTTTAGTACATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-119)

• Type IV leader peptidase family (Peptidase_A24) (130-236)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	56.716	94.7	0.537
pilD	Acinetobacter baumannii D1279779	50.554	95.76	0.484
pilD	Acinetobacter nosocomialis M2	50.554	95.76	0.484
pilD	Vibrio cholerae strain A1552	49.281	98.233	0.484
pilD	Vibrio campbellii strain DS40M4	46.863	95.76	0.449