Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ABX026_RS00720 Genome accession   NZ_CP160075
Coordinates   149684..150916 (+) Length   410 a.a.
NCBI ID   WP_025329863.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144684..155916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX026_RS00705 (ABX026_15200) - 145086..146060 (+) 975 WP_371751035.1 hypothetical protein -
  ABX026_RS00710 (ABX026_09585) recJ 146057..147754 (+) 1698 WP_371751036.1 single-stranded-DNA-specific exonuclease RecJ -
  ABX026_RS00715 (ABX026_09590) pilF 147956..149635 (+) 1680 WP_367424191.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABX026_RS00720 (ABX026_09595) pilG 149684..150916 (+) 1233 WP_025329863.1 type II secretion system F family protein Machinery gene
  ABX026_RS00725 (ABX026_09600) pilD 150923..151774 (+) 852 WP_174829707.1 A24 family peptidase Machinery gene
  ABX026_RS00730 (ABX026_09605) coaE 151771..152385 (+) 615 WP_367424195.1 dephospho-CoA kinase -
  ABX026_RS00735 (ABX026_09610) zapD 152391..153143 (+) 753 WP_279027999.1 cell division protein ZapD -
  ABX026_RS00740 (ABX026_09615) yacG 153143..153340 (+) 198 WP_174829705.1 DNA gyrase inhibitor YacG -
  ABX026_RS00745 (ABX026_09620) - 153387..154307 (+) 921 WP_025329858.1 ABC transporter ATP-binding protein -
  ABX026_RS00750 (ABX026_09630) - 154304..155065 (+) 762 WP_174829704.1 ABC transporter permease -
  ABX026_RS00755 (ABX026_09635) - 155120..155368 (+) 249 WP_025329856.1 BolA family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45046.94 Da        Isoelectric Point: 9.8445

>NTDB_id=1017656 ABX026_RS00720 WP_025329863.1 149684..150916(+) (pilG) [Snodgrassella alvi strain Amel10]
MNKPVAVSKTKSSGTSFSFEGKNLKTEQIVRGEVVAKDEADARAKLTRRQIRVIQIAKVKKQRQKKISQADITVFTRQLS
TMMKSGLPMMQAFDIAAKGHSNPAMTQLLLQIRSDVEQGTSLAESFSKHPKYFDHFYCNLVHAGEAGGVLEAILDKLSVY
KEKTQGIKKKVKSALTYPAVVVVVAIALVIVMMMFVLPSFGKVYESMGVPLPGLTQFMMNISNFFVHYGIFVIIALIGGV
IGLFKWYQNSDDLKKRFDYMLLKMPIFGQIVRKATIARWSRTTATLFAAGVPLVEVLDSVAGASGNIRYEEATQEIRAKV
NQGISLTSAMQATELFPNMVMQMASIGEESGSLDDMLNKAAEFYEEDVDTAVAQLSSLMEPIIMVVLGGIVGIILVAMYL
PLFNIGNAVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1017656 ABX026_RS00720 WP_025329863.1 149684..150916(+) (pilG) [Snodgrassella alvi strain Amel10]
ATGAATAAACCCGTAGCAGTATCCAAAACCAAATCTTCCGGTACCAGTTTCAGTTTTGAAGGCAAAAACCTTAAAACTGA
ACAGATTGTACGCGGAGAAGTTGTCGCAAAAGACGAGGCTGATGCACGCGCCAAGCTAACCCGGCGTCAAATTCGTGTAA
TACAGATTGCCAAGGTCAAAAAACAGCGCCAAAAGAAAATCAGTCAGGCAGATATTACCGTCTTTACCCGACAATTATCC
ACCATGATGAAATCTGGTCTGCCTATGATGCAGGCTTTCGATATTGCAGCCAAAGGGCATTCTAACCCGGCAATGACCCA
GCTACTGTTGCAAATCCGCTCTGATGTTGAGCAAGGTACATCTCTGGCAGAGTCTTTTTCTAAACATCCGAAATATTTCG
ATCATTTTTACTGTAATCTGGTGCATGCGGGTGAAGCCGGTGGTGTACTAGAGGCTATTCTTGACAAGCTGTCGGTATAT
AAAGAAAAAACTCAGGGTATCAAGAAAAAAGTTAAAAGTGCCTTGACCTACCCAGCTGTGGTAGTAGTCGTAGCAATCGC
ACTGGTAATCGTCATGATGATGTTCGTATTACCTTCATTTGGTAAAGTTTACGAGAGTATGGGCGTACCATTACCTGGTT
TGACTCAGTTCATGATGAATATTTCCAATTTCTTTGTACATTACGGCATATTTGTCATCATTGCACTGATAGGTGGTGTA
ATTGGCTTATTTAAGTGGTATCAGAACTCAGATGATCTGAAAAAACGTTTTGATTATATGCTGTTAAAAATGCCTATTTT
CGGCCAAATCGTTCGTAAAGCCACCATTGCACGCTGGTCTCGTACAACAGCAACTCTATTTGCAGCAGGCGTACCATTGG
TAGAAGTTCTTGATTCAGTTGCCGGAGCTTCCGGTAATATTCGCTATGAAGAAGCTACTCAGGAAATCCGTGCCAAAGTT
AATCAGGGTATTTCTCTTACCTCAGCCATGCAGGCAACAGAGTTGTTTCCGAACATGGTGATGCAAATGGCTTCAATCGG
TGAAGAATCAGGTTCTTTGGATGACATGCTCAATAAAGCCGCAGAATTCTATGAAGAAGATGTAGATACTGCCGTTGCAC
AACTGTCTTCATTGATGGAACCGATTATTATGGTTGTACTTGGTGGTATTGTCGGGATAATTCTGGTTGCCATGTATTTA
CCGCTATTTAATATCGGTAATGCTGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

64.885

95.854

0.622
  pilG Neisseria meningitidis 44/76-A

64.122

95.854

0.615
  pilC Legionella pneumophila strain ERS1305867

48.12

97.317

0.468
  pilC Acinetobacter baylyi ADP1

44.361

97.317

0.432
  pilC Acinetobacter baumannii D1279779

44.361

97.317

0.432
  pilC Pseudomonas stutzeri DSM 10701

41.855

97.317

0.407
  pilC Vibrio cholerae strain A1552

38.06

98.049

0.373

Multiple sequence alignment