Detailed information NTG1017657

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABX026_RS00725
• Genome accession: NZ_CP160075
• Coordinates: 150923..151774 (+)
• Length: 283 a.a.
• NCBI ID: WP_174829707.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145923..156774

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX026_RS00710 (ABX026_09585)	recJ	146057..147754 (+)	1698	WP_371751036.1	single-stranded-DNA-specific exonuclease RecJ	-
ABX026_RS00715 (ABX026_09590)	pilF	147956..149635 (+)	1680	WP_367424191.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABX026_RS00720 (ABX026_09595)	pilG	149684..150916 (+)	1233	WP_025329863.1	type II secretion system F family protein	Machinery gene
ABX026_RS00725 (ABX026_09600)	pilD	150923..151774 (+)	852	WP_174829707.1	A24 family peptidase	Machinery gene
ABX026_RS00730 (ABX026_09605)	coaE	151771..152385 (+)	615	WP_367424195.1	dephospho-CoA kinase	-
ABX026_RS00735 (ABX026_09610)	zapD	152391..153143 (+)	753	WP_279027999.1	cell division protein ZapD	-
ABX026_RS00740 (ABX026_09615)	yacG	153143..153340 (+)	198	WP_174829705.1	DNA gyrase inhibitor YacG	-
ABX026_RS00745 (ABX026_09620)	-	153387..154307 (+)	921	WP_025329858.1	ABC transporter ATP-binding protein	-
ABX026_RS00750 (ABX026_09630)	-	154304..155065 (+)	762	WP_174829704.1	ABC transporter permease	-
ABX026_RS00755 (ABX026_09635)	-	155120..155368 (+)	249	WP_025329856.1	BolA family protein	-
ABX026_RS00760 (ABX026_09640)	murA	155408..156667 (+)	1260	WP_371751037.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31280.22 Da
• Isoelectric Point: 8.0985

>NTDB_id=1017657 ABX026_RS00725 WP_174829707.1 150923..151774(+) (pilD) [Snodgrassella alvi strain Amel10]
MLTDTLFFSVIALISGCAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAEHTSHFNLCVPHSACPHCQHKIRWWQNIPL
VSYILLRGRCASCSASISPRYFCVELLTGIAFAAVVWRYDVTPVAAGGLILTAALIALTFIDAETQLLPDQITLPLLWLG
LLFNWYCEFVPLASAVWGAALGYLSLWSLFWLFKLLTGKDGMGYGDFKLLAALGAWMGASALPLIVFMAAIVGIIASLIL
RVARSQPMAFGPALAIAGWIVWMTNSQINQLIHWWLRLSGFST

Nucleotide

• Length: 852 bp

>NTDB_id=1017657 ABX026_RS00725 WP_174829707.1 150923..151774(+) (pilD) [Snodgrassella alvi strain Amel10]
ATGTTAACTGATACTCTGTTTTTTAGCGTCATTGCATTAATATCGGGATGTGCTGTTGGCAGTTTTCTGAATGTAGTGAT
CTATCGTTTACCCATTATGATGGAACGAAGCTGGCAGGCAGAAGCACGAATGGCATTGCAACTGCCTGCAGAACACACCA
GTCACTTTAATCTCTGTGTTCCGCATTCAGCCTGCCCGCACTGTCAGCATAAAATCCGCTGGTGGCAGAATATACCTCTT
GTCAGTTATATACTGCTACGCGGACGCTGTGCTTCATGTTCAGCATCCATCAGCCCACGCTATTTTTGCGTGGAATTATT
AACCGGTATTGCATTTGCTGCAGTAGTCTGGCGTTATGATGTCACACCTGTTGCTGCGGGCGGTCTGATACTGACTGCCG
CACTGATTGCACTGACCTTTATAGATGCTGAAACCCAGCTGTTACCTGACCAAATCACCTTACCTCTACTCTGGCTGGGT
TTACTATTTAACTGGTATTGTGAATTTGTTCCCTTAGCTTCTGCTGTCTGGGGTGCTGCATTAGGCTATCTGAGCTTGTG
GTCACTTTTCTGGTTATTCAAACTACTAACCGGTAAAGATGGTATGGGTTATGGTGATTTTAAACTACTGGCTGCCCTTG
GTGCGTGGATGGGTGCTTCTGCATTACCTTTAATTGTATTTATGGCAGCAATTGTCGGTATTATTGCTTCACTTATTCTC
AGAGTTGCCCGCAGCCAGCCTATGGCTTTTGGTCCGGCACTGGCCATTGCAGGCTGGATTGTGTGGATGACAAACAGTCA
GATTAATCAGTTGATTCACTGGTGGCTGCGTCTTTCCGGGTTTAGTACATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-119)

• Type IV leader peptidase family (Peptidase_A24) (130-236)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	56.343	94.7	0.534
pilD	Vibrio cholerae strain A1552	49.462	98.587	0.488
pilD	Acinetobacter baumannii D1279779	50.554	95.76	0.484
pilD	Acinetobacter nosocomialis M2	50.554	95.76	0.484
pilD	Vibrio campbellii strain DS40M4	46.863	95.76	0.449