Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSQ88_RS10740 Genome accession   NZ_CP159977
Coordinates   2191625..2192860 (-) Length   411 a.a.
NCBI ID   WP_251240949.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0751     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2186625..2197860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ88_RS10695 (NSQ88_10695) - 2186853..2187113 (-) 261 WP_034769908.1 transcriptional regulator SplA domain-containing protein -
  NSQ88_RS10700 (NSQ88_10700) - 2187306..2187815 (-) 510 Protein_2069 glycogen/starch/alpha-glucan phosphorylase -
  NSQ88_RS10705 (NSQ88_10705) - 2187875..2188045 (-) 171 WP_231553317.1 metal-sensing transcriptional repressor -
  NSQ88_RS10710 (NSQ88_10710) - 2188491..2188667 (-) 177 WP_311316081.1 putative holin-like toxin -
  NSQ88_RS10715 (NSQ88_10715) - 2189064..2189978 (+) 915 WP_363549137.1 CAP domain-containing protein -
  NSQ88_RS10720 (NSQ88_10720) - 2190075..2190215 (+) 141 WP_363549140.1 hypothetical protein -
  NSQ88_RS10725 (NSQ88_10725) - 2190207..2190395 (-) 189 WP_363549143.1 hypothetical protein -
  NSQ88_RS10730 (NSQ88_10730) - 2190478..2190921 (-) 444 WP_227092320.1 YaiI/YqxD family protein -
  NSQ88_RS10735 (NSQ88_10735) - 2191178..2191426 (-) 249 WP_034769901.1 hypothetical protein -
  NSQ88_RS10740 (NSQ88_10740) cinA 2191625..2192860 (-) 1236 WP_251240949.1 competence/damage-inducible protein A Machinery gene
  NSQ88_RS10745 (NSQ88_10745) pgsA 2192934..2193512 (-) 579 WP_041903278.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ88_RS10750 (NSQ88_10750) - 2193630..2194526 (-) 897 WP_041903276.1 RodZ domain-containing protein -
  NSQ88_RS10755 (NSQ88_10755) - 2194544..2195335 (-) 792 WP_041903274.1 DUF3388 domain-containing protein -
  NSQ88_RS10760 (NSQ88_10760) - 2195666..2195923 (-) 258 WP_034769894.1 DUF3243 domain-containing protein -
  NSQ88_RS10765 (NSQ88_10765) - 2196094..2196825 (-) 732 WP_034769892.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45308.82 Da        Isoelectric Point: 4.9487

>NTDB_id=1016934 NSQ88_RS10740 WP_251240949.1 2191625..2192860(-) (cinA) [Caldifermentibacillus hisashii strain FSL W8-0751]
MNGEIIAVGSELLLGQIANTNAKFISQQLAGIGVNVFFHTVVGDNAERLKRAMEIAESRSDLIIFTGGLGPTKDDLTKET
IANHLGVKLVHNEAALGSIEEFFRKRNVTMTPNNRKQALVFEHAEVLPNDTGMAPGMVLTKNEITYMLLPGPPSEMEPMF
SNYGMKAILNRLESIDRIESRVLRFFGIGESTLEHTLEDFIDQQTNPTIAPLASDDEVTLRLTAKHPSDLERRRLLDETE
AKIMERVGEFFYGYDETTIIKEMGNLIESNNMTLSVAESLTGGLFQEEVTSIAGVSKWFQGGIVSYSPEIKINVLGVNQD
TVETYGVVSKECAMEMAKNVRKLMDTDIGISFTGVAGPASLEGKEPGSVYIGVSFKNKPTASHFVLLPGNRETVRVRAVK
TGAWYILKELR

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1016934 NSQ88_RS10740 WP_251240949.1 2191625..2192860(-) (cinA) [Caldifermentibacillus hisashii strain FSL W8-0751]
TTGAATGGTGAAATTATTGCAGTTGGGTCTGAATTATTACTTGGCCAAATTGCTAATACGAATGCAAAATTTATTTCTCA
ACAATTGGCCGGTATTGGGGTAAATGTATTTTTCCATACCGTTGTTGGGGATAATGCCGAGCGGTTGAAAAGAGCGATGG
AAATTGCCGAAAGTCGTTCCGATTTAATTATTTTTACGGGTGGCTTAGGGCCTACAAAAGATGATTTAACAAAAGAAACC
ATTGCAAATCATCTGGGAGTAAAGCTTGTTCATAATGAAGCGGCTCTTGGCTCGATAGAAGAATTTTTTAGAAAACGGAA
TGTTACCATGACACCGAATAATCGGAAACAAGCACTTGTTTTTGAACATGCGGAGGTTTTGCCAAACGATACCGGAATGG
CACCGGGAATGGTGTTAACAAAAAATGAAATTACTTATATGCTACTTCCCGGTCCGCCTAGTGAAATGGAGCCGATGTTT
TCAAATTATGGGATGAAAGCAATCCTAAATCGGTTGGAATCCATTGATCGAATTGAATCTCGTGTGTTACGATTTTTTGG
TATTGGTGAATCAACTCTGGAACATACGCTGGAAGATTTCATTGATCAGCAGACAAACCCGACCATTGCCCCGCTCGCTT
CTGATGACGAAGTGACATTGCGGCTTACAGCTAAACATCCCTCAGATCTTGAACGAAGAAGGTTACTGGATGAGACAGAA
GCAAAAATTATGGAGCGGGTGGGTGAATTTTTTTACGGATATGATGAAACAACGATTATCAAAGAAATGGGCAATTTGAT
TGAAAGCAACAACATGACACTTTCGGTAGCTGAAAGTTTAACGGGCGGACTGTTTCAGGAAGAAGTGACATCCATTGCCG
GTGTCAGCAAATGGTTTCAGGGCGGGATCGTATCGTATTCCCCTGAAATAAAAATAAATGTACTTGGCGTAAATCAGGAC
ACTGTTGAAACTTATGGTGTCGTCAGCAAAGAATGTGCGATGGAGATGGCAAAAAATGTCCGAAAATTGATGGACACTGA
TATCGGAATCAGCTTTACCGGTGTTGCCGGACCAGCCTCATTGGAAGGAAAAGAACCCGGTTCAGTATATATTGGTGTGT
CATTTAAGAATAAGCCTACCGCCAGTCATTTTGTCTTATTGCCGGGAAACAGAGAAACGGTTCGTGTCCGTGCCGTAAAA
ACCGGTGCATGGTATATATTAAAGGAACTTCGGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-404)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.425

99.027

0.608
  cinA Streptococcus mutans UA159

45.926

98.54

0.453
  cinA Streptococcus pneumoniae TIGR4

47.781

93.187

0.445
  cinA Streptococcus mitis NCTC 12261

47.52

93.187

0.443
  cinA Streptococcus mitis SK321

47.52

93.187

0.443
  cinA Streptococcus pneumoniae Rx1

47.52

93.187

0.443
  cinA Streptococcus pneumoniae R6

47.52

93.187

0.443
  cinA Streptococcus pneumoniae D39

47.258

93.187

0.44
  cinA Streptococcus suis isolate S10

39.578

92.214

0.365

Multiple sequence alignment