Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABVQ18_RS09215 | Genome accession | NZ_CP159767 |
| Coordinates | 2106905..2107354 (-) | Length | 149 a.a. |
| NCBI ID | WP_323811348.1 | Uniprot ID | - |
| Organism | Snodgrassella alvi strain Acer05 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2101905..2112354
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABVQ18_RS09200 (ABVQ18_08220) | - | 2102006..2102458 (-) | 453 | WP_323811347.1 | pilin | - |
| ABVQ18_RS09205 (ABVQ18_18360) | - | 2103294..2104724 (-) | 1431 | WP_370386929.1 | sulfatase-like hydrolase/transferase | - |
| ABVQ18_RS09210 (ABVQ18_18365) | - | 2105286..2106716 (-) | 1431 | WP_370388208.1 | sulfatase-like hydrolase/transferase | - |
| ABVQ18_RS09215 (ABVQ18_18370) | pilA | 2106905..2107354 (-) | 450 | WP_323811348.1 | pilin | Machinery gene |
| ABVQ18_RS09220 (ABVQ18_18375) | - | 2107768..2108217 (-) | 450 | WP_323811380.1 | pilin | - |
| ABVQ18_RS09225 (ABVQ18_08260) | - | 2108467..2109270 (-) | 804 | WP_370388209.1 | hypothetical protein | - |
| ABVQ18_RS09230 (ABVQ18_18380) | - | 2109625..2111847 (+) | 2223 | WP_370388210.1 | FepA family TonB-dependent siderophore receptor | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15581.01 Da Isoelectric Point: 9.3024
>NTDB_id=1015772 ABVQ18_RS09215 WP_323811348.1 2106905..2107354(-) (pilA) [Snodgrassella alvi strain Acer05]
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIVDNMQNNTCDSNNKAIDEQKGKYGTA
KIAGSVTMTSATSAMGDTGCTILYTVNSTGVSAAIKGKKLELSVLKNGSLKKSAAGTDMDEKYIPKAYL
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIVDNMQNNTCDSNNKAIDEQKGKYGTA
KIAGSVTMTSATSAMGDTGCTILYTVNSTGVSAAIKGKKLELSVLKNGSLKKSAAGTDMDEKYIPKAYL
Nucleotide
Download Length: 450 bp
>NTDB_id=1015772 ABVQ18_RS09215 WP_323811348.1 2106905..2107354(-) (pilA) [Snodgrassella alvi strain Acer05]
ATGAAAGCATTCCAAAAAGGTTTTACATTAATCGAATTGATGATTGTTATTGCGATTATTGGTATTTTGGCAGCCATCGC
TGTACCTGCTTATTCTGACTATATCGCGCGCTCTCAAGCATCTGAAGCGTCTAGTCTGGCTGCCGGTTTGAAAACACAGA
TAGTAGATAACATGCAAAATAATACCTGTGATTCAAATAATAAAGCTATAGATGAGCAAAAAGGTAAATATGGTACTGCA
AAAATTGCAGGATCCGTAACAATGACCTCAGCTACTTCAGCCATGGGTGATACAGGTTGTACAATTCTGTATACTGTAAA
TAGTACCGGTGTTTCTGCTGCTATTAAAGGTAAAAAATTAGAATTGTCTGTGTTGAAAAATGGTTCATTAAAGAAATCAG
CAGCCGGTACAGATATGGATGAAAAATATATACCTAAAGCTTATTTATAA
ATGAAAGCATTCCAAAAAGGTTTTACATTAATCGAATTGATGATTGTTATTGCGATTATTGGTATTTTGGCAGCCATCGC
TGTACCTGCTTATTCTGACTATATCGCGCGCTCTCAAGCATCTGAAGCGTCTAGTCTGGCTGCCGGTTTGAAAACACAGA
TAGTAGATAACATGCAAAATAATACCTGTGATTCAAATAATAAAGCTATAGATGAGCAAAAAGGTAAATATGGTACTGCA
AAAATTGCAGGATCCGTAACAATGACCTCAGCTACTTCAGCCATGGGTGATACAGGTTGTACAATTCTGTATACTGTAAA
TAGTACCGGTGTTTCTGCTGCTATTAAAGGTAAAAAATTAGAATTGTCTGTGTTGAAAAATGGTTCATTAAAGAAATCAG
CAGCCGGTACAGATATGGATGAAAAATATATACCTAAAGCTTATTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter nosocomialis M2 |
48.322 |
100 |
0.483 |
| pilE | Neisseria gonorrhoeae MS11 |
38.462 |
100 |
0.436 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40 |
100 |
0.416 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
42.029 |
92.617 |
0.389 |
| pilA | Pseudomonas aeruginosa PAK |
37.013 |
100 |
0.383 |
| comP | Acinetobacter baylyi ADP1 |
37.333 |
100 |
0.376 |
| pilA2 | Legionella pneumophila str. Paris |
38.194 |
96.644 |
0.369 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.5 |
96.644 |
0.362 |