Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   APECO2_RS05625 Genome accession   NZ_CP006834
Coordinates   1074503..1075888 (-) Length   461 a.a.
NCBI ID   WP_001025165.1    Uniprot ID   -
Organism   Escherichia coli APEC O2-211     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1069503..1080888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO2_RS05595 (APECO2_01900) mutT 1069838..1070236 (+) 399 WP_000736051.1 8-oxo-dGTP diphosphatase MutT -
  APECO2_RS05600 (APECO2_01905) yacG 1070438..1070635 (-) 198 WP_000005042.1 DNA gyrase inhibitor YacG -
  APECO2_RS05605 (APECO2_01910) zapD 1070645..1071388 (-) 744 WP_001194743.1 cell division protein ZapD -
  APECO2_RS05610 (APECO2_01915) coaE 1071388..1072008 (-) 621 WP_001269512.1 dephospho-CoA kinase -
  APECO2_RS27870 - 1072033..1072077 (+) 45 WP_120795372.1 protein YacM -
  APECO2_RS05615 (APECO2_01920) guaC 1072233..1073276 (+) 1044 WP_001217338.1 GMP reductase -
  APECO2_RS05620 (APECO2_01925) hofC 1073311..1074513 (-) 1203 WP_047340741.1 protein transport protein HofC -
  APECO2_RS05625 (APECO2_01930) pilB 1074503..1075888 (-) 1386 WP_001025165.1 type II secretion system protein GspE Machinery gene
  APECO2_RS05630 (APECO2_01935) pilA 1075898..1076338 (-) 441 WP_000360904.1 prepilin peptidase-dependent pilin Machinery gene
  APECO2_RS05640 (APECO2_01940) nadC 1076541..1077434 (-) 894 WP_001135153.1 carboxylating nicotinate-nucleotide diphosphorylase -
  APECO2_RS05645 (APECO2_01945) ampD 1077522..1078073 (+) 552 WP_000923730.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  APECO2_RS05650 (APECO2_01950) ampE 1078070..1078924 (+) 855 WP_000171975.1 beta-lactamase regulator AmpE -
  APECO2_RS05655 (APECO2_01955) aroP 1078967..1080337 (-) 1371 WP_000399017.1 aromatic amino acid transporter AroP -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50680.42 Da        Isoelectric Point: 6.5405

>NTDB_id=101565 APECO2_RS05625 WP_001025165.1 1074503..1075888(-) (pilB) [Escherichia coli APEC O2-211]
MNIPQLTALCLRYQGVLLDASEEVVHVAVVDAPSHELLDALHFATTKRIEITCWTRQQMEGHASRTQQTLPVAIHEKHQP
KAELLTRTLQSALEQRASDIHIEPADNAYRIRLRIDGVLHPLPDVLPDAGVALTARLKVLGNLDIAEHRLPQDGQFTVEL
AGNAVSFRIATLPCRGGEKVVLRLLQQVSQALDVNTLGMQPLQLADFAHALQQPQGLVLVTGPTGSGKTVTLYSALQTLN
TADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAEIAIKAAQTGHLVLSTLHTNS
TTETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCRLQQGEPIHIPDNVWPSPLPRWQAPGCVHCYHGFYGRTALFE
VLPITPFIRQLISANTDVESLETHARQAGMRTLFENGCLAVEQGLTTFEELIRVLGMPHGE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=101565 APECO2_RS05625 WP_001025165.1 1074503..1075888(-) (pilB) [Escherichia coli APEC O2-211]
ATGAATATTCCACAGCTCACCGCCCTGTGTCTGCGTTATCAGGGAGTCTTGCTGGATGCCAGCGAAGAGGTGGTTCATGT
TGCGGTGGTCGATGCCCCTTCGCATGAGCTACTGGACGCATTGCATTTCGCTACCACCAAACGTATTGAGATCACCTGCT
GGACGCGCCAACAAATGGAAGGTCACGCCAGTCGCACCCAACAGACATTGCCCGTAGCTATTCATGAGAAGCATCAGCCC
AAAGCAGAGTTGCTGACTCGAACGTTACAATCTGCGCTGGAACAACGCGCGTCTGATATTCATATCGAACCAGCGGACAA
TGCCTACCGCATCCGCTTGCGTATCGACGGTGTATTGCATCCTTTACCGGATGTTTTACCGGATGCCGGAGTCGCATTAA
CCGCCAGATTAAAAGTGCTGGGCAACCTGGATATTGCGGAACATCGCCTGCCGCAGGACGGGCAATTCACTGTCGAACTG
GCAGGAAACGCCGTCTCATTTCGTATTGCGACCTTACCATGCCGGGGTGGTGAAAAGGTGGTATTAAGGTTGTTACAGCA
GGTGAGCCAGGCACTGGATGTCAACACGCTGGGGATGCAGCCGTTACAACTGGCGGACTTTGCTCATGCCTTGCAACAAC
CACAGGGACTGGTGCTGGTAACTGGCCCTACAGGCAGCGGCAAAACGGTCACGCTTTATAGTGCCCTGCAAACGCTGAAT
ACCGCTGACATTAATATTTGTAGCGTCGAAGATCCGGTTGAGATCCCCATAGCCGGACTAAACCAGACGCAAATCCATCC
GCGTGCCGGTCTTACCTTTCAGGGCGTTTTGCGTGCGTTATTGCGCCAGGACCCTGACGTCATCATGATCGGAGAGATCC
GCGATGGCGAAACAGCAGAGATCGCTATTAAAGCGGCGCAAACCGGTCACCTGGTGTTGTCTACCCTACACACCAATTCC
ACCACTGAAACACTGGTACGTTTACAGCAAATGGGAGTCGCCCGCTGGATGCTCTCATCGGCGCTTACGCTGGTAATAGC
CCAGCGTCTGGTACGCAAACTTTGCCCACATTGCCGCCTGCAGCAAGGGGAGCCCATCCATATTCCAGACAATGTATGGC
CGTCGCCGCTGCCCCGCTGGCAAGCACCCGGTTGTGTACATTGCTACCACGGTTTTTATGGTCGCACGGCCTTATTTGAA
GTTCTGCCCATAACACCGTTCATACGTCAGCTTATTTCCGCTAATACCGACGTTGAATCGCTGGAAACGCACGCCCGACA
GGCGGGTATGCGAACGCTTTTTGAAAACGGCTGCCTGGCCGTGGAGCAAGGCTTAACCACCTTTGAAGAGTTAATCCGCG
TATTGGGAATGCCGCATGGCGAGTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(88-353)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(8-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Glaesserella parasuis strain SC1401

41.505

100

0.419
  pilB Legionella pneumophila strain ERS1305867

49.738

82.863

0.412
  pilB Haemophilus influenzae 86-028NP

39.915

100

0.408
  pilB Vibrio campbellii strain DS40M4

48.446

83.731

0.406
  pilB Vibrio cholerae strain A1552

46.923

84.599

0.397
  pilB Vibrio parahaemolyticus RIMD 2210633

46.667

84.599

0.395
  pilB Acinetobacter baylyi ADP1

45.22

83.948

0.38
  pilF Neisseria gonorrhoeae MS11

44.416

83.514

0.371
  pilB Acinetobacter baumannii D1279779

44.072

84.165

0.371
  pilB Haemophilus influenzae Rd KW20

43.928

83.948

0.369
  pilF Thermus thermophilus HB27

41.439

87.419

0.362

Multiple sequence alignment