Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | APECO2_RS05630 | Genome accession | NZ_CP006834 |
| Coordinates | 1075898..1076338 (-) | Length | 146 a.a. |
| NCBI ID | WP_000360904.1 | Uniprot ID | P36647 |
| Organism | Escherichia coli APEC O2-211 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1070898..1081338
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APECO2_RS05610 (APECO2_01915) | coaE | 1071388..1072008 (-) | 621 | WP_001269512.1 | dephospho-CoA kinase | - |
| APECO2_RS27870 | - | 1072033..1072077 (+) | 45 | WP_120795372.1 | protein YacM | - |
| APECO2_RS05615 (APECO2_01920) | guaC | 1072233..1073276 (+) | 1044 | WP_001217338.1 | GMP reductase | - |
| APECO2_RS05620 (APECO2_01925) | hofC | 1073311..1074513 (-) | 1203 | WP_047340741.1 | protein transport protein HofC | - |
| APECO2_RS05625 (APECO2_01930) | pilB | 1074503..1075888 (-) | 1386 | WP_001025165.1 | type II secretion system protein GspE | Machinery gene |
| APECO2_RS05630 (APECO2_01935) | pilA | 1075898..1076338 (-) | 441 | WP_000360904.1 | prepilin peptidase-dependent pilin | Machinery gene |
| APECO2_RS05640 (APECO2_01940) | nadC | 1076541..1077434 (-) | 894 | WP_001135153.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| APECO2_RS05645 (APECO2_01945) | ampD | 1077522..1078073 (+) | 552 | WP_000923730.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| APECO2_RS05650 (APECO2_01950) | ampE | 1078070..1078924 (+) | 855 | WP_000171975.1 | beta-lactamase regulator AmpE | - |
| APECO2_RS05655 (APECO2_01955) | aroP | 1078967..1080337 (-) | 1371 | WP_000399017.1 | aromatic amino acid transporter AroP | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15621.75 Da Isoelectric Point: 4.3938
>NTDB_id=101566 APECO2_RS05630 WP_000360904.1 1075898..1076338(-) (pilA) [Escherichia coli APEC O2-211]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=101566 APECO2_RS05630 WP_000360904.1 1075898..1076338(-) (pilA) [Escherichia coli APEC O2-211]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTTCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTTCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |