Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ABV520_RS08840 Genome accession   NZ_CP159584
Coordinates   1973303..1974535 (+) Length   410 a.a.
NCBI ID   WP_100156468.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1968303..1979535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV520_RS08825 (ABV520_17340) - 1968710..1969684 (+) 975 WP_370386593.1 hypothetical protein -
  ABV520_RS08830 (ABV520_07830) recJ 1969681..1971378 (+) 1698 WP_370386594.1 single-stranded-DNA-specific exonuclease RecJ -
  ABV520_RS08835 (ABV520_07835) pilF 1971577..1973256 (+) 1680 WP_370386595.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABV520_RS08840 (ABV520_07840) pilG 1973303..1974535 (+) 1233 WP_100156468.1 type II secretion system F family protein Machinery gene
  ABV520_RS08845 (ABV520_07845) pilD 1974542..1975393 (+) 852 WP_370386596.1 A24 family peptidase Machinery gene
  ABV520_RS08850 (ABV520_07850) coaE 1975390..1976004 (+) 615 WP_367431324.1 dephospho-CoA kinase -
  ABV520_RS08855 (ABV520_07855) zapD 1976010..1976762 (+) 753 WP_100140881.1 cell division protein ZapD -
  ABV520_RS08860 (ABV520_07860) yacG 1976762..1976959 (+) 198 WP_100140841.1 DNA gyrase inhibitor YacG -
  ABV520_RS08865 (ABV520_07865) - 1977009..1977926 (+) 918 WP_370386597.1 ABC transporter ATP-binding protein -
  ABV520_RS08870 (ABV520_07870) - 1977929..1978684 (+) 756 WP_100140882.1 ABC transporter permease -
  ABV520_RS08875 (ABV520_07875) - 1978741..1978989 (+) 249 WP_100140843.1 BolA family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45158.33 Da        Isoelectric Point: 9.9541

>NTDB_id=1014698 ABV520_RS08840 WP_100156468.1 1973303..1974535(+) (pilG) [Snodgrassella alvi strain Acer03]
MNKPVAVSKAKSTGISYSFEGKNIKTEQIVRGEVVAKDEAEARAKLNRRQIRVIQINKVKKQRQKKISPADITVFTRQLS
TMMKSGLPMMQAFDIAAKGHSNPAMTQMLMQIRSDVEQGTSLADSFAKYPKYFDRFYCNLVRAGETGGVLEAILDKLAVY
KEKTQGIKKKVKSALTYPVVVVVVAIALVIVMMMFVLPSFGKVYEGMGVPLPGLTQFMMNISNFFVHFGVFIIIALIAGV
IGLIKWYQNSDDLKKRFDYMLLKMPIFGQIVRKATIARWARTTATLFAAGVPLVEVLDSVAGAAGNIKYEEATQEIRAKV
NQGISLTSAMQATELFPNMVMQMASIGEESGSLDDMLNKSAEFYEEDVDTAVSQLSSLMEPIIMVVLGLIVGVILVAMYL
PLFNIGNAVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1014698 ABV520_RS08840 WP_100156468.1 1973303..1974535(+) (pilG) [Snodgrassella alvi strain Acer03]
ATGAACAAACCAGTAGCAGTATCCAAAGCTAAATCTACCGGCATCAGCTACAGCTTTGAAGGAAAAAACATCAAAACTGA
GCAGATTGTACGCGGCGAAGTAGTAGCAAAAGATGAGGCAGAAGCCCGTGCCAAACTTAACCGAAGACAGATTCGTGTAA
TTCAGATTAACAAAGTCAAAAAACAGCGTCAGAAAAAAATCAGTCCGGCGGATATAACAGTCTTTACTCGACAATTATCA
ACCATGATGAAATCCGGTTTACCGATGATGCAGGCTTTTGATATCGCAGCCAAAGGCCACTCAAACCCTGCTATGACCCA
AATGCTGATGCAAATCCGTTCTGATGTTGAGCAGGGTACATCATTAGCTGATTCTTTTGCCAAATATCCAAAGTATTTTG
ATCGATTTTATTGCAATCTGGTACGTGCAGGCGAAACAGGCGGTGTATTGGAAGCCATATTAGATAAACTGGCCGTATAC
AAAGAAAAAACTCAAGGAATTAAGAAAAAGGTTAAAAGTGCTTTGACCTATCCGGTAGTAGTGGTAGTTGTCGCAATTGC
ACTGGTAATCGTCATGATGATGTTCGTTTTACCATCATTCGGTAAAGTTTACGAAGGTATGGGCGTTCCTCTGCCAGGGC
TTACACAATTCATGATGAATATTTCTAATTTCTTTGTCCACTTTGGTGTATTTATTATCATTGCACTCATTGCAGGTGTA
ATTGGACTAATAAAATGGTATCAGAACTCAGATGATTTGAAAAAACGTTTTGATTATATGTTATTGAAGATGCCCATTTT
TGGACAGATCGTACGTAAAGCCACAATTGCCCGCTGGGCGCGCACAACAGCAACCTTGTTTGCTGCCGGCGTACCCTTAG
TAGAAGTACTTGACTCAGTTGCCGGAGCTGCGGGCAATATCAAATATGAAGAAGCGACACAGGAAATTCGGGCCAAGGTT
AATCAGGGTATCTCCCTCACCTCTGCCATGCAGGCTACTGAATTATTTCCCAATATGGTGATGCAAATGGCCTCTATTGG
CGAAGAATCCGGATCACTTGATGATATGTTAAATAAATCAGCCGAATTTTATGAAGAAGACGTAGATACTGCTGTTTCAC
AGCTATCCTCTTTGATGGAACCCATTATCATGGTAGTACTCGGTTTGATCGTCGGTGTTATTCTGGTTGCTATGTATTTA
CCACTCTTCAACATCGGTAATGCAGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

65.394

95.854

0.627
  pilG Neisseria meningitidis 44/76-A

64.631

95.854

0.62
  pilC Legionella pneumophila strain ERS1305867

47

97.561

0.459
  pilC Acinetobacter baumannii D1279779

43.609

97.317

0.424
  pilC Acinetobacter baylyi ADP1

42.965

97.073

0.417
  pilC Pseudomonas stutzeri DSM 10701

41.604

97.317

0.405
  pilC Vibrio cholerae strain A1552

38.557

98.049

0.378

Multiple sequence alignment