Detailed information NTG1014699

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABV520_RS08845
• Genome accession: NZ_CP159584
• Coordinates: 1974542..1975393 (+)
• Length: 283 a.a.
• NCBI ID: WP_370386596.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer03
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1969542..1980393

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABV520_RS08830 (ABV520_07830)	recJ	1969681..1971378 (+)	1698	WP_370386594.1	single-stranded-DNA-specific exonuclease RecJ	-
ABV520_RS08835 (ABV520_07835)	pilF	1971577..1973256 (+)	1680	WP_370386595.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABV520_RS08840 (ABV520_07840)	pilG	1973303..1974535 (+)	1233	WP_100156468.1	type II secretion system F family protein	Machinery gene
ABV520_RS08845 (ABV520_07845)	pilD	1974542..1975393 (+)	852	WP_370386596.1	A24 family peptidase	Machinery gene
ABV520_RS08850 (ABV520_07850)	coaE	1975390..1976004 (+)	615	WP_367431324.1	dephospho-CoA kinase	-
ABV520_RS08855 (ABV520_07855)	zapD	1976010..1976762 (+)	753	WP_100140881.1	cell division protein ZapD	-
ABV520_RS08860 (ABV520_07860)	yacG	1976762..1976959 (+)	198	WP_100140841.1	DNA gyrase inhibitor YacG	-
ABV520_RS08865 (ABV520_07865)	-	1977009..1977926 (+)	918	WP_370386597.1	ABC transporter ATP-binding protein	-
ABV520_RS08870 (ABV520_07870)	-	1977929..1978684 (+)	756	WP_100140882.1	ABC transporter permease	-
ABV520_RS08875 (ABV520_07875)	-	1978741..1978989 (+)	249	WP_100140843.1	BolA family protein	-
ABV520_RS08880 (ABV520_07880)	murA	1979033..1980289 (+)	1257	WP_367431330.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31180.19 Da
• Isoelectric Point: 8.2363

>NTDB_id=1014699 ABV520_RS08845 WP_370386596.1 1974542..1975393(+) (pilD) [Snodgrassella alvi strain Acer03]
MLSDTLFFSIIALITGLAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAENFARFNLCVPPSACPHCQHKIRWWQNIPL
ISYLILHGRCAACAKPISPRYFCVELLTGLAFAAVVWRYDVTPVAAGGLVLTAALITLTFIDADTQLLPDQITLPLLWLG
LLFNWYSEFVSLSAAIWGAVAGYMSLWSLFWLFKLITGKDGMGYGDFKLLAALGAWMGAAALPLIVFIAAIVGIIASLIL
KVARSQPMAFGPALAISGWIVWMANSQISQLIHWWLQLSGFNA

Nucleotide

• Length: 852 bp

>NTDB_id=1014699 ABV520_RS08845 WP_370386596.1 1974542..1975393(+) (pilD) [Snodgrassella alvi strain Acer03]
ATGTTATCAGATACACTGTTTTTCTCCATCATCGCATTAATAACAGGTTTAGCTGTAGGCAGCTTTCTGAACGTAGTCAT
CTACCGTCTGCCGATCATGATGGAACGCAGCTGGCAAGCTGAAGCACGAATGGCATTGCAATTACCGGCAGAAAACTTTG
CCCGTTTCAATCTTTGCGTACCCCCGTCAGCCTGCCCTCATTGCCAGCATAAAATTCGCTGGTGGCAAAATATACCATTG
ATAAGCTATCTTATCTTACATGGTCGTTGTGCTGCTTGTGCAAAACCGATTAGCCCTCGCTATTTCTGTGTTGAATTGCT
TACCGGACTAGCGTTTGCCGCAGTAGTATGGCGCTATGATGTAACACCAGTTGCCGCCGGTGGTCTGGTTTTGACAGCTG
CGTTGATAACATTAACATTTATCGATGCTGATACTCAGCTCTTGCCAGATCAGATTACTTTACCATTACTGTGGCTGGGA
TTACTGTTTAATTGGTATAGTGAATTTGTATCCTTATCTGCAGCTATATGGGGAGCAGTAGCAGGCTATATGAGCTTGTG
GTCACTGTTTTGGCTATTCAAGCTCATAACCGGAAAAGATGGCATGGGTTATGGTGATTTTAAACTGCTGGCTGCTCTAG
GCGCATGGATGGGTGCTGCTGCATTGCCATTAATTGTATTTATAGCTGCTATTGTTGGCATCATTGCCTCTTTGATACTC
AAAGTTGCCCGCAGTCAGCCAATGGCTTTTGGCCCGGCTCTAGCCATCTCCGGCTGGATTGTTTGGATGGCCAACAGCCA
AATTAGCCAGCTCATTCACTGGTGGTTGCAACTTTCTGGATTCAATGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (129-236)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	55.019	95.053	0.523
pilD	Acinetobacter baumannii D1279779	52.03	95.76	0.498
pilD	Acinetobacter nosocomialis M2	51.661	95.76	0.495
pilD	Vibrio cholerae strain A1552	49.097	97.88	0.481
pilD	Vibrio campbellii strain DS40M4	46.494	95.76	0.445