Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABV520_RS02915 | Genome accession | NZ_CP159584 |
| Coordinates | 638479..638928 (+) | Length | 149 a.a. |
| NCBI ID | WP_323811348.1 | Uniprot ID | - |
| Organism | Snodgrassella alvi strain Acer03 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 633479..643928
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABV520_RS02900 (ABV520_16015) | - | 633982..636204 (-) | 2223 | WP_267390520.1 | FepA family TonB-dependent siderophore receptor | - |
| ABV520_RS02905 (ABV520_16020) | - | 636559..637362 (+) | 804 | WP_267390519.1 | hypothetical protein | - |
| ABV520_RS02910 (ABV520_14280) | - | 637612..638061 (+) | 450 | WP_370386927.1 | pilin | - |
| ABV520_RS02915 (ABV520_16025) | pilA | 638479..638928 (+) | 450 | WP_323811348.1 | pilin | Machinery gene |
| ABV520_RS02920 (ABV520_16030) | - | 639117..640547 (+) | 1431 | WP_370386928.1 | sulfatase-like hydrolase/transferase | - |
| ABV520_RS02925 (ABV520_16035) | - | 641112..642542 (+) | 1431 | WP_370386929.1 | sulfatase-like hydrolase/transferase | - |
| ABV520_RS02930 (ABV520_14325) | - | 643378..643830 (+) | 453 | WP_323811347.1 | pilin | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15581.01 Da Isoelectric Point: 9.3024
>NTDB_id=1014682 ABV520_RS02915 WP_323811348.1 638479..638928(+) (pilA) [Snodgrassella alvi strain Acer03]
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIVDNMQNNTCDSNNKAIDEQKGKYGTA
KIAGSVTMTSATSAMGDTGCTILYTVNSTGVSAAIKGKKLELSVLKNGSLKKSAAGTDMDEKYIPKAYL
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIVDNMQNNTCDSNNKAIDEQKGKYGTA
KIAGSVTMTSATSAMGDTGCTILYTVNSTGVSAAIKGKKLELSVLKNGSLKKSAAGTDMDEKYIPKAYL
Nucleotide
Download Length: 450 bp
>NTDB_id=1014682 ABV520_RS02915 WP_323811348.1 638479..638928(+) (pilA) [Snodgrassella alvi strain Acer03]
ATGAAAGCATTCCAAAAAGGTTTTACATTAATCGAATTAATGATTGTTATTGCGATTATTGGTATTTTGGCAGCCATCGC
TGTACCTGCTTATTCTGACTATATCGCGCGCTCTCAAGCATCTGAAGCGTCTAGTCTGGCTGCCGGTTTGAAAACACAGA
TAGTAGATAACATGCAAAATAATACCTGTGATTCAAATAATAAAGCTATAGATGAGCAAAAAGGTAAATATGGTACTGCA
AAAATTGCAGGATCCGTAACAATGACCTCAGCTACTTCAGCCATGGGTGATACAGGTTGTACAATTCTGTATACTGTAAA
TAGTACCGGTGTTTCTGCTGCTATTAAAGGTAAAAAATTAGAATTGTCTGTGTTGAAAAATGGTTCATTAAAGAAATCAG
CAGCCGGTACAGATATGGATGAAAAATATATACCTAAAGCTTATTTATAA
ATGAAAGCATTCCAAAAAGGTTTTACATTAATCGAATTAATGATTGTTATTGCGATTATTGGTATTTTGGCAGCCATCGC
TGTACCTGCTTATTCTGACTATATCGCGCGCTCTCAAGCATCTGAAGCGTCTAGTCTGGCTGCCGGTTTGAAAACACAGA
TAGTAGATAACATGCAAAATAATACCTGTGATTCAAATAATAAAGCTATAGATGAGCAAAAAGGTAAATATGGTACTGCA
AAAATTGCAGGATCCGTAACAATGACCTCAGCTACTTCAGCCATGGGTGATACAGGTTGTACAATTCTGTATACTGTAAA
TAGTACCGGTGTTTCTGCTGCTATTAAAGGTAAAAAATTAGAATTGTCTGTGTTGAAAAATGGTTCATTAAAGAAATCAG
CAGCCGGTACAGATATGGATGAAAAATATATACCTAAAGCTTATTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter nosocomialis M2 |
48.322 |
100 |
0.483 |
| pilE | Neisseria gonorrhoeae MS11 |
38.462 |
100 |
0.436 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40 |
100 |
0.416 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
42.029 |
92.617 |
0.389 |
| pilA | Pseudomonas aeruginosa PAK |
37.013 |
100 |
0.383 |
| comP | Acinetobacter baylyi ADP1 |
37.333 |
100 |
0.376 |
| pilA2 | Legionella pneumophila str. Paris |
38.194 |
96.644 |
0.369 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.5 |
96.644 |
0.362 |