Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABVN18_RS26735 Genome accession   NZ_CP159257
Coordinates   5742266..5743474 (+) Length   402 a.a.
NCBI ID   WP_353631831.1    Uniprot ID   -
Organism   Pseudomonas canadensis strain MYb395     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5737266..5748474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN18_RS26710 (ABVN18_26710) nadC 5738643..5739491 (+) 849 WP_122686044.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ABVN18_RS26715 (ABVN18_26715) - 5739642..5739947 (-) 306 WP_028618798.1 DUF6388 family protein -
  ABVN18_RS26725 (ABVN18_26725) - 5740214..5741614 (-) 1401 WP_236318602.1 O-antigen ligase family protein -
  ABVN18_RS26730 (ABVN18_26730) - 5741650..5742063 (-) 414 WP_353632606.1 pilin -
  ABVN18_RS26735 (ABVN18_26735) pilC 5742266..5743474 (+) 1209 WP_353631831.1 type II secretion system F family protein Machinery gene
  ABVN18_RS26740 (ABVN18_26740) pilD 5743471..5744337 (+) 867 WP_353631832.1 A24 family peptidase Machinery gene
  ABVN18_RS26745 (ABVN18_26745) coaE 5744334..5744957 (+) 624 WP_028618793.1 dephospho-CoA kinase -
  ABVN18_RS26750 (ABVN18_26750) yacG 5744954..5745154 (+) 201 WP_028618792.1 DNA gyrase inhibitor YacG -
  ABVN18_RS26755 (ABVN18_26755) - 5745151..5745366 (-) 216 WP_003171680.1 hypothetical protein -
  ABVN18_RS26760 (ABVN18_26760) - 5745432..5746121 (-) 690 WP_028618791.1 energy-coupling factor ABC transporter permease -
  ABVN18_RS26765 (ABVN18_26765) - 5746225..5746854 (+) 630 WP_010213242.1 DUF1780 domain-containing protein -
  ABVN18_RS26770 (ABVN18_26770) - 5746909..5747082 (+) 174 WP_016976295.1 DUF3094 family protein -
  ABVN18_RS26775 (ABVN18_26775) - 5747143..5748441 (+) 1299 WP_353631833.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43419.93 Da        Isoelectric Point: 10.1186

>NTDB_id=1012921 ABVN18_RS26735 WP_353631831.1 5742266..5743474(+) (pilC) [Pseudomonas canadensis strain MYb395]
MDDALTLYAWEGINRKGRRVCGQTTGHNLAWVRAQLRQQGISPGHVRKKSSALRGLTPPIKSTDITLLTRQLATLLKAGI
PLLQAFDIIGEGFENRAVRELVQGLKQAIAAGSSLSDALRKKPRCFDELFCNLVAAGEQAGALETLLERVAIHREKSEQL
RARIKKAMTYPIAVLAVACLVTGVLLIHVVPQFQNLFAGVDGTLPGFTLQVIALSEFMQKAWWIVALGVLAGGMGLRHFY
RAVPAFRRWLDAGLLKTPLAGKLLTKSAVARYARTLSTTFAAGVPLAQALDSVAGAVGSGPFKQAIEHMRHDVSTGMALN
QSMVASGLFPRMAIQMTAIGEESGTLDRMLEKVANHYEADVDNLVDNLTSLMEPLIMVILGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1012921 ABVN18_RS26735 WP_353631831.1 5742266..5743474(+) (pilC) [Pseudomonas canadensis strain MYb395]
ATGGACGACGCTTTAACGCTGTACGCCTGGGAAGGCATCAATCGCAAAGGACGCAGGGTGTGCGGGCAAACCACGGGGCA
CAATCTTGCCTGGGTCAGGGCCCAGTTGCGCCAACAGGGCATCAGCCCCGGCCATGTGCGCAAAAAATCCTCCGCTCTAC
GGGGACTCACACCGCCGATCAAATCGACGGATATCACCCTGCTCACTCGCCAACTTGCGACGCTGCTTAAGGCCGGAATT
CCCCTGCTGCAAGCCTTCGACATCATCGGCGAAGGCTTCGAAAACCGCGCTGTGCGTGAGCTGGTGCAAGGACTGAAACA
AGCAATTGCCGCAGGTTCCAGCCTGTCCGACGCCTTGCGCAAAAAGCCTCGCTGCTTCGATGAGCTGTTTTGCAACCTGG
TGGCCGCCGGCGAACAGGCCGGAGCACTGGAAACCCTGCTGGAGCGCGTGGCGATTCATCGGGAAAAGAGTGAGCAGTTA
AGGGCCAGGATCAAAAAAGCCATGACCTATCCGATCGCGGTGCTGGCGGTGGCCTGTCTTGTCACTGGCGTCTTGTTGAT
CCACGTCGTGCCGCAATTCCAGAATCTGTTTGCCGGCGTCGACGGCACGCTGCCCGGCTTTACCTTGCAGGTGATCGCCC
TGTCCGAGTTCATGCAGAAGGCCTGGTGGATCGTAGCCCTTGGCGTTCTCGCGGGAGGCATGGGATTGCGCCACTTCTAT
CGCGCCGTCCCTGCTTTTCGACGCTGGCTGGACGCCGGTTTGTTGAAAACCCCACTCGCAGGCAAACTGCTGACAAAATC
GGCCGTGGCCCGCTACGCACGCACACTGTCCACAACCTTCGCAGCGGGTGTTCCATTGGCTCAGGCATTGGATTCAGTGG
CCGGCGCCGTTGGTTCAGGGCCGTTCAAACAGGCAATCGAGCATATGCGACACGACGTATCCACCGGCATGGCATTGAAT
CAATCCATGGTCGCCAGCGGTCTGTTTCCTCGTATGGCAATCCAGATGACTGCCATCGGCGAGGAGTCAGGCACACTGGA
CCGCATGCTGGAAAAGGTCGCCAACCATTACGAGGCCGACGTGGACAACCTGGTCGACAACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTGATCCTGGGGAGCATTGTCGGTGCGCTGGTAATCGCCATGTACTTGCCGGTCTTCCAGCTGGGGAGC
GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.468

98.259

0.565
  pilC Acinetobacter baumannii D1279779

51.392

98.259

0.505
  pilC Acinetobacter baylyi ADP1

50.503

99.005

0.5
  pilC Legionella pneumophila strain ERS1305867

49

99.502

0.488
  pilG Neisseria gonorrhoeae MS11

42.969

95.522

0.41
  pilC Vibrio cholerae strain A1552

41.414

98.507

0.408
  pilG Neisseria meningitidis 44/76-A

41.71

96.02

0.4
  pilC Vibrio campbellii strain DS40M4

38.579

98.01

0.378

Multiple sequence alignment