Detailed information NTG1012922

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABVN18_RS26740
• Genome accession: NZ_CP159257
• Coordinates: 5743471..5744337 (+)
• Length: 288 a.a.
• NCBI ID: WP_353631832.1
• Uniprot ID: -
• Organism: Pseudomonas canadensis strain MYb395
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5738471..5749337

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVN18_RS26710 (ABVN18_26710)	nadC	5738643..5739491 (+)	849	WP_122686044.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ABVN18_RS26715 (ABVN18_26715)	-	5739642..5739947 (-)	306	WP_028618798.1	DUF6388 family protein	-
ABVN18_RS26725 (ABVN18_26725)	-	5740214..5741614 (-)	1401	WP_236318602.1	O-antigen ligase family protein	-
ABVN18_RS26730 (ABVN18_26730)	-	5741650..5742063 (-)	414	WP_353632606.1	pilin	-
ABVN18_RS26735 (ABVN18_26735)	pilC	5742266..5743474 (+)	1209	WP_353631831.1	type II secretion system F family protein	Machinery gene
ABVN18_RS26740 (ABVN18_26740)	pilD	5743471..5744337 (+)	867	WP_353631832.1	A24 family peptidase	Machinery gene
ABVN18_RS26745 (ABVN18_26745)	coaE	5744334..5744957 (+)	624	WP_028618793.1	dephospho-CoA kinase	-
ABVN18_RS26750 (ABVN18_26750)	yacG	5744954..5745154 (+)	201	WP_028618792.1	DNA gyrase inhibitor YacG	-
ABVN18_RS26755 (ABVN18_26755)	-	5745151..5745366 (-)	216	WP_003171680.1	hypothetical protein	-
ABVN18_RS26760 (ABVN18_26760)	-	5745432..5746121 (-)	690	WP_028618791.1	energy-coupling factor ABC transporter permease	-
ABVN18_RS26765 (ABVN18_26765)	-	5746225..5746854 (+)	630	WP_010213242.1	DUF1780 domain-containing protein	-
ABVN18_RS26770 (ABVN18_26770)	-	5746909..5747082 (+)	174	WP_016976295.1	DUF3094 family protein	-
ABVN18_RS26775 (ABVN18_26775)	-	5747143..5748441 (+)	1299	WP_353631833.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31700.80 Da
• Isoelectric Point: 8.0054

>NTDB_id=1012922 ABVN18_RS26740 WP_353631832.1 5743471..5744337(+) (pilD) [Pseudomonas canadensis strain MYb395]
MSLLLVAHPWAFVVMAGVLGLIVGSFLNVLAWRLPKMLEREWRAQAHEVLGLPADPAGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISARYPLTELACGLISAWVAWHFGFGWQAGAVLVLSWGLLAMSLIDADHQLLPDLLVMP
LLWLGLIVNGFGLLTTLPDALWGAVFGYMSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVF
VGLILMRLRKAQASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=1012922 ABVN18_RS26740 WP_353631832.1 5743471..5744337(+) (pilD) [Pseudomonas canadensis strain MYb395]
TTGAGCCTGTTACTGGTTGCGCATCCGTGGGCTTTTGTCGTGATGGCGGGTGTACTGGGGCTGATCGTCGGCAGTTTCCT
TAACGTGCTGGCATGGCGCCTGCCAAAAATGCTCGAACGGGAATGGCGCGCCCAGGCCCATGAAGTCCTCGGTCTACCCG
CCGATCCCGCTGGGCCGACCTACAACCTGATGCACCCCAATTCCTGCTGCCCGCACTGCAACCATCCGATACGGCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGTTCCTGCGAGGTCGCTGTGCCCATTGCCAAGGTGCCATCAGCGCCCGCTATCC
GCTTACTGAACTGGCGTGTGGACTGATCTCGGCCTGGGTCGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGGTGCAGTGC
TGGTGCTGAGCTGGGGTTTGTTGGCGATGAGCCTGATCGATGCCGACCATCAACTGTTGCCGGATTTGCTGGTGATGCCA
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGCCTGTTGACGACATTGCCCGACGCCCTGTGGGGCGCGGTGTTCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGCTACCGGCAAGGACGGTATGGGCCACGGCGACTTCAAGT
TACTCGCACTGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGATGACGCTGTTGATGTCGTCGTTGGTCGGCGTGTTC
GTCGGCTTGATCCTGATGCGCCTGCGCAAGGCCCAGGCGTCGGCACCAATGCCGTTTGGTCCGTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.417	98.264	0.535
pilD	Vibrio campbellii strain DS40M4	51.071	97.222	0.497
pilD	Neisseria gonorrhoeae MS11	51.852	93.75	0.486
pilD	Acinetobacter baumannii D1279779	47.81	95.139	0.455
pilD	Acinetobacter nosocomialis M2	47.81	95.139	0.455