Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABOX98_RS26465 Genome accession   NZ_CP158570
Coordinates   5568780..5569997 (+) Length   405 a.a.
NCBI ID   WP_044061094.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SRPA1308     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5563780..5574997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOX98_RS26445 (ABOX98_26445) nadC 5565371..5566219 (+) 849 WP_003116246.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ABOX98_RS26455 (ABOX98_26455) - 5566372..5566845 (-) 474 WP_015503553.1 pilin -
  ABOX98_RS26460 (ABOX98_26460) pilB 5567076..5568776 (+) 1701 WP_003120945.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABOX98_RS26465 (ABOX98_26465) pilC 5568780..5569997 (+) 1218 WP_044061094.1 type II secretion system F family protein Machinery gene
  ABOX98_RS26470 (ABOX98_26470) pilD 5570000..5570872 (+) 873 WP_003116251.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  ABOX98_RS26475 (ABOX98_26475) coaE 5570869..5571480 (+) 612 WP_003094654.1 dephospho-CoA kinase -
  ABOX98_RS26480 (ABOX98_26480) yacG 5571477..5571677 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  ABOX98_RS26485 (ABOX98_26485) - 5571714..5571923 (-) 210 WP_003120946.1 hypothetical protein -
  ABOX98_RS26490 (ABOX98_26490) - 5572029..5572718 (-) 690 WP_003094662.1 energy-coupling factor ABC transporter permease -
  ABOX98_RS26495 (ABOX98_26495) - 5572715..5573185 (-) 471 WP_003094664.1 hypothetical protein -
  ABOX98_RS26500 (ABOX98_26500) - 5573182..5573607 (-) 426 WP_003103865.1 GNAT family N-acetyltransferase -
  ABOX98_RS26505 (ABOX98_26505) - 5573740..5574369 (+) 630 WP_003094668.1 DUF1780 domain-containing protein -
  ABOX98_RS26510 (ABOX98_26510) - 5574366..5574815 (+) 450 WP_023100233.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44268.27 Da        Isoelectric Point: 9.8988

>NTDB_id=1011774 ABOX98_RS26465 WP_044061094.1 5568780..5569997(+) (pilC) [Pseudomonas aeruginosa strain SRPA1308]
MADKALKTCVFVWEGTDKKGAKVKGELAGQNTMLVKAQLRKQGINPLKVRKKGITLLGKGKRVKPMDIALFTRQMATMMG
AGVPLLQSFDIISEGFDNPNMRKLVDEIKQEVSAGNSLANSLRKKPLYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVVLVAIIVSAILLIKVVPQFQSVFSSFGAELPAFTMMVINLSNLLQEWWLVVLIGLFSASFAIK
ELHKRSVNFRNTVDRYMLKIPIIGGILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRNAVSKIKQDVSTGM
QLNFSMRTTNVFPNMAIQMTAIGEESGSLDDMLGKVAAFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1011774 ABOX98_RS26465 WP_044061094.1 5568780..5569997(+) (pilC) [Pseudomonas aeruginosa strain SRPA1308]
ATGGCGGATAAAGCGTTAAAAACCTGTGTTTTCGTCTGGGAAGGCACGGACAAGAAAGGGGCAAAGGTCAAGGGGGAGTT
GGCTGGCCAGAACACTATGCTGGTGAAGGCGCAACTGCGCAAACAGGGCATAAATCCGCTCAAGGTCAGAAAAAAGGGCA
TTACCCTTCTCGGCAAGGGAAAGCGCGTAAAGCCGATGGACATCGCACTATTTACTCGTCAGATGGCAACCATGATGGGT
GCTGGGGTTCCTCTCTTGCAATCGTTCGACATAATTTCCGAAGGTTTCGACAATCCCAACATGCGTAAGCTGGTCGACGA
GATCAAACAAGAGGTCTCGGCGGGTAACAGCCTGGCAAACTCCTTGCGAAAGAAACCTCTTTATTTTGACGATCTCTATT
GCAACCTGGTGGATGCAGGTGAACAATCTGGCGCCTTGGAGACTTTGCTTGACCGTGTTGCCACCTATAAGGAAAAAACC
GAATCGCTAAAAGCCAAGATAAAAAAGGCTATGACATACCCCATTGCCGTCGTCTTGGTCGCGATCATTGTTTCAGCCAT
TCTCCTGATCAAGGTCGTACCCCAGTTCCAATCCGTTTTCTCCAGTTTCGGAGCGGAACTACCAGCCTTTACAATGATGG
TGATAAACCTGTCAAATCTTTTACAGGAATGGTGGCTAGTCGTCCTCATCGGATTATTCAGCGCCAGCTTCGCCATCAAG
GAATTGCATAAGCGTTCAGTAAATTTCCGTAACACGGTAGACCGCTATATGTTGAAAATACCGATAATCGGAGGAATACT
TTACAAATCAGCCGTGGCACGTTACGCCCGTACACTTTCAACAACTTTCGCCGCAGGTGTTCCATTGGTGGAGGCACTAG
ACTCTGTCTCTGGAGCGACAGGAAACGTGGTATTCCGCAACGCGGTAAGCAAGATCAAACAGGATGTATCCACAGGTATG
CAATTGAACTTCTCCATGAGAACGACCAATGTATTCCCCAACATGGCAATCCAGATGACAGCCATCGGTGAGGAATCCGG
TTCTCTGGACGACATGTTGGGCAAGGTGGCTGCGTTCTATGAGGAGGAAGTAGACAATGCCGTCGACAATCTGACAACTC
TCATGGAACCTATGATCATGGCCGTGCTCGGCGTACTGGTCGGCGGCCTGATCATCGCTATGTATCTACCGATCTTCCAA
CTGGGTTCCGTTGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.765

100

0.788
  pilC Acinetobacter baumannii D1279779

58.911

99.753

0.588
  pilC Acinetobacter baylyi ADP1

59.045

98.272

0.58
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilG Neisseria meningitidis 44/76-A

44.279

99.259

0.44
  pilG Neisseria gonorrhoeae MS11

44.03

99.259

0.437
  pilC Vibrio cholerae strain A1552

43.457

100

0.435
  pilC Vibrio campbellii strain DS40M4

43.182

97.778

0.422
  pilC Thermus thermophilus HB27

37.406

99.012

0.37

Multiple sequence alignment