Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABS324_RS12225 Genome accession   NZ_CP158496
Coordinates   2341342..2342580 (+) Length   412 a.a.
NCBI ID   WP_048656453.1    Uniprot ID   -
Organism   Bacillus cereus strain NBNZ-2162     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2336342..2347580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS324_RS12195 (ABS324_12195) - 2336396..2337682 (+) 1287 WP_098616341.1 pitrilysin family protein -
  ABS324_RS12200 (ABS324_12200) - 2337783..2338496 (+) 714 WP_000759604.1 SDR family oxidoreductase -
  ABS324_RS12205 (ABS324_12205) - 2338573..2338821 (+) 249 WP_000114450.1 DUF3243 domain-containing protein -
  ABS324_RS12210 (ABS324_12210) - 2338960..2339745 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  ABS324_RS12215 (ABS324_12215) - 2339767..2340678 (+) 912 WP_000137461.1 RodZ domain-containing protein -
  ABS324_RS12220 (ABS324_12220) pgsA 2340743..2341321 (+) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABS324_RS12225 (ABS324_12225) cinA 2341342..2342580 (+) 1239 WP_048656453.1 competence/damage-inducible protein A Machinery gene
  ABS324_RS12230 (ABS324_12230) recA 2342724..2343755 (+) 1032 WP_001283860.1 recombinase RecA Machinery gene
  ABS324_RS12235 (ABS324_12235) rny 2344236..2345801 (+) 1566 WP_000099770.1 ribonuclease Y -
  ABS324_RS12240 (ABS324_12240) - 2345964..2346758 (+) 795 WP_098616342.1 TIGR00282 family metallophosphoesterase -
  ABS324_RS12245 (ABS324_12245) spoVS 2346908..2347168 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45419.70 Da        Isoelectric Point: 5.2258

>NTDB_id=1011615 ABS324_RS12225 WP_048656453.1 2341342..2342580(+) (cinA) [Bacillus cereus strain NBNZ-2162]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQSVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKDEPTVVFSLNLSGSRQQIRERTAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1011615 ABS324_RS12225 WP_048656453.1 2341342..2342580(+) (cinA) [Bacillus cereus strain NBNZ-2162]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGATTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGATCACGGTATGG
CGCCGGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTGTTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAATCTGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTACTAAAAGCGGATAT
TGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGA
TTAAGGATGAACCAACTGTAGTCTTTTCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.252

100

0.583
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

40.318

91.505

0.369

Multiple sequence alignment