Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABCR88_RS28095 Genome accession   NZ_CP158490
Coordinates   6119746..6120963 (+) Length   405 a.a.
NCBI ID   WP_053153924.1    Uniprot ID   -
Organism   Pseudomonas sp. W17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6114746..6125963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCR88_RS28080 (ABCR88_28080) - 6115286..6118204 (+) 2919 WP_041119925.1 DUF748 domain-containing protein -
  ABCR88_RS28085 (ABCR88_28085) - 6118415..6118771 (-) 357 WP_011063519.1 BON domain-containing protein -
  ABCR88_RS28090 (ABCR88_28090) - 6119000..6119416 (-) 417 WP_041119926.1 pilin -
  ABCR88_RS28095 (ABCR88_28095) pilC 6119746..6120963 (+) 1218 WP_053153924.1 type II secretion system F family protein Machinery gene
  ABCR88_RS28100 (ABCR88_28100) pilD 6120966..6121838 (+) 873 WP_053153928.1 A24 family peptidase Machinery gene
  ABCR88_RS28105 (ABCR88_28105) coaE 6121835..6122458 (+) 624 WP_011063523.1 dephospho-CoA kinase -
  ABCR88_RS28110 (ABCR88_28110) yacG 6122455..6122658 (+) 204 WP_011063524.1 DNA gyrase inhibitor YacG -
  ABCR88_RS28115 (ABCR88_28115) - 6122678..6122893 (-) 216 WP_011063525.1 hypothetical protein -
  ABCR88_RS28120 (ABCR88_28120) - 6122957..6123646 (-) 690 WP_053153931.1 energy-coupling factor ABC transporter permease -
  ABCR88_RS28125 (ABCR88_28125) - 6123643..6124110 (-) 468 WP_026019989.1 hypothetical protein -
  ABCR88_RS28130 (ABCR88_28130) - 6124254..6124883 (+) 630 WP_011063528.1 DUF1780 domain-containing protein -
  ABCR88_RS28135 (ABCR88_28135) - 6125073..6125246 (+) 174 WP_015637073.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43829.48 Da        Isoelectric Point: 10.5006

>NTDB_id=1011573 ABCR88_RS28095 WP_053153924.1 6119746..6120963(+) (pilC) [Pseudomonas sp. W17]
MAVKAPATSVYLWHGTDSQGRPLTGELSAATPALIRAQLRRQGITPTRIRRKPKGWLRLHQRVGARDIALLTRQLATLMQ
AGVPLLQSFDIIAESFEHPQMRQLLASLKRDIEAGSSLATALRRQPRHFDPLYCNLVDAGEQAGALDTLLERVATYKEKS
ENLKARLKKAMVYPLAVIGVAVVVSSILLLKVVPQFQSLFAGFNAELPLLTQWVIALSHFIQQQGALLLAAGVLGGLAAR
LAYQRSPSLRDRLDVGLLHMPLAGPLLHKSAVARYARTLATTFAAGVPLVQALDSVAGASGNPVFRQAVQRIRQQVAAGM
QLNFAMRASGVFPTMAIQMTAIGEESGTLDHLLEKVAIHYEVEVDNLVDSLTSLMEPLIMVVLGGIVGALVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1011573 ABCR88_RS28095 WP_053153924.1 6119746..6120963(+) (pilC) [Pseudomonas sp. W17]
ATGGCGGTAAAAGCACCCGCGACCAGTGTCTATCTCTGGCACGGCACCGACAGCCAGGGCCGCCCCCTCACCGGAGAACT
CAGCGCCGCGACCCCGGCCCTGATCAGGGCGCAATTGCGCAGACAGGGCATCACCCCAACCCGAATCCGACGCAAACCCA
AGGGCTGGCTGCGCCTGCATCAGCGAGTAGGGGCACGGGACATTGCCCTGCTCACCCGGCAGTTGGCCACGCTGATGCAG
GCCGGGGTGCCGCTGCTGCAATCCTTCGACATCATTGCCGAAAGTTTCGAGCATCCGCAGATGCGCCAACTGCTGGCCAG
CCTCAAGCGCGACATCGAGGCCGGCTCCAGCCTGGCCACGGCATTGCGCAGACAACCGCGCCACTTCGACCCGCTGTACT
GCAATCTGGTGGACGCCGGCGAGCAGGCCGGCGCCCTGGATACCCTGCTGGAGAGAGTCGCCACCTACAAGGAAAAGAGC
GAGAACCTGAAGGCGCGGCTGAAGAAGGCCATGGTCTATCCCTTGGCGGTGATCGGCGTGGCGGTCGTGGTCAGCAGCAT
CCTGCTGCTCAAGGTGGTCCCCCAGTTCCAGAGCTTGTTCGCCGGTTTCAATGCCGAGCTGCCACTGCTCACCCAGTGGG
TCATCGCTCTGTCACATTTCATCCAGCAGCAGGGGGCGCTGCTGCTGGCCGCCGGTGTGCTGGGCGGGCTTGCGGCGCGC
CTGGCCTATCAGCGCTCCCCGAGCTTGCGTGACCGCCTGGATGTCGGCCTTTTGCACATGCCCCTGGCCGGGCCACTGCT
GCACAAATCCGCGGTGGCCCGCTACGCACGGACCCTGGCCACCACCTTCGCCGCCGGCGTTCCCTTGGTGCAGGCCCTGG
ATTCAGTGGCCGGAGCCAGCGGCAACCCTGTCTTCAGGCAAGCGGTGCAACGGATCCGCCAGCAGGTCGCCGCCGGCATG
CAATTGAACTTTGCCATGCGCGCCAGCGGCGTCTTCCCGACCATGGCGATCCAGATGACCGCCATCGGCGAAGAGTCCGG
AACCCTGGATCATCTGCTGGAAAAAGTCGCGATCCATTACGAGGTCGAGGTGGACAACCTGGTGGACAGCCTGACCAGCC
TCATGGAGCCGTTGATCATGGTGGTCCTGGGGGGTATCGTCGGCGCCCTGGTGGTTGCCATGTACCTGCCTATCTTCCAA
CTCGGTACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.519

100

0.585
  pilC Acinetobacter baylyi ADP1

53.301

100

0.538
  pilC Acinetobacter baumannii D1279779

53.431

100

0.538
  pilC Legionella pneumophila strain ERS1305867

46.814

100

0.472
  pilC Vibrio cholerae strain A1552

43.401

97.284

0.422
  pilG Neisseria gonorrhoeae MS11

42.356

98.519

0.417
  pilG Neisseria meningitidis 44/76-A

42.462

98.272

0.417
  pilC Vibrio campbellii strain DS40M4

41.542

99.259

0.412
  pilC Thermus thermophilus HB27

38.25

98.765

0.378

Multiple sequence alignment