Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABR328_RS01735 Genome accession   NZ_CP158462
Coordinates   235766..237007 (-) Length   413 a.a.
NCBI ID   WP_350345901.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain TCI727     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 230766..242007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR328_RS01720 (ABR328_01720) - 232031..232681 (+) 651 WP_003593868.1 YigZ family protein -
  ABR328_RS01725 (ABR328_01725) rny 232775..234346 (-) 1572 WP_003657913.1 ribonuclease Y -
  ABR328_RS01730 (ABR328_01730) recA 234648..235709 (-) 1062 WP_003598111.1 recombinase RecA Machinery gene
  ABR328_RS01735 (ABR328_01735) cinA 235766..237007 (-) 1242 WP_350345901.1 competence/damage-inducible protein A Machinery gene
  ABR328_RS01740 (ABR328_01740) pgsA 237382..237975 (-) 594 WP_003564171.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABR328_RS01745 (ABR328_01745) - 237972..238901 (-) 930 WP_003593861.1 helix-turn-helix domain-containing protein -
  ABR328_RS01750 (ABR328_01750) - 238988..239716 (-) 729 WP_003569514.1 SDR family oxidoreductase -
  ABR328_RS01755 (ABR328_01755) - 239716..241008 (-) 1293 WP_003661348.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44293.62 Da        Isoelectric Point: 5.9602

>NTDB_id=1011371 ABR328_RS01735 WP_350345901.1 235766..237007(-) (cinA) [Lacticaseibacillus paracasei strain TCI727]
MQAEIIAVGTEILMGQITNTNGAYMAKQLTALGIDSYHQQVVGDNGPRLEEAIKLAESRSNLVILIGGLGPTPDDLTKQT
LAAHLNRKLVEDPDAMAKLQARVKQQQRPMTPNNQLQAMYPEGADILVNRVGLAVGAWIVNGQHTYVLLPGPPKEFVPMV
DHELLPHLAKWSGHAEIMVSRVLRFFGIGESQLVTDLDDLIANQTDPTIATYIKDHEVTVRVTASGATEKDADAKLEPMI
GAIMDRDGQYFYGYGDDNSLAKEVVKTLAANDMQITAAESLTAGAFQAALGDVPGVSTYFKGGFVTYSLATKAAFLAIDA
RELAAHGVVSAFTAKAMAEHARRKAAADISVSFTGVAGPDTLEGQPAGTVWIGLARRGQLPEAHVYHFPGGRNDVRQRAV
MTGMMLALRALQA

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1011371 ABR328_RS01735 WP_350345901.1 235766..237007(-) (cinA) [Lacticaseibacillus paracasei strain TCI727]
ATGCAAGCAGAGATTATTGCTGTCGGGACAGAGATCCTGATGGGACAGATTACTAACACAAATGGTGCCTATATGGCTAA
GCAACTGACAGCACTGGGTATTGATAGCTACCATCAACAGGTGGTGGGAGACAACGGGCCGCGACTTGAGGAGGCCATTA
AGTTGGCGGAAAGTCGCAGTAATTTAGTTATTTTGATTGGCGGGTTAGGACCGACACCAGATGATCTGACCAAGCAAACA
TTGGCAGCGCACTTGAACCGCAAATTGGTTGAAGATCCTGACGCTATGGCTAAATTACAGGCGCGCGTCAAGCAACAGCA
GCGGCCAATGACGCCTAATAATCAATTACAGGCCATGTATCCGGAAGGCGCCGATATTTTGGTCAATCGGGTTGGCTTAG
CGGTTGGCGCGTGGATCGTCAATGGGCAGCACACCTATGTCTTATTGCCGGGACCACCGAAGGAATTCGTTCCGATGGTT
GATCATGAACTGCTGCCGCACCTAGCAAAATGGAGCGGCCACGCGGAAATTATGGTCAGCCGGGTCTTACGTTTCTTTGG
CATTGGCGAATCGCAACTAGTGACAGATCTGGACGACTTGATTGCCAACCAAACCGATCCGACCATTGCAACTTATATCA
AGGATCATGAGGTGACGGTGCGCGTCACTGCCAGTGGCGCTACCGAAAAAGACGCTGATGCAAAGTTAGAACCAATGATC
GGTGCCATCATGGATCGTGATGGTCAATATTTTTACGGCTACGGTGACGACAATAGTTTGGCAAAAGAGGTTGTGAAGAC
GCTTGCGGCAAATGATATGCAAATTACTGCAGCTGAGAGTTTGACTGCTGGCGCATTTCAAGCAGCGTTAGGCGATGTGC
CGGGGGTATCCACTTATTTTAAGGGCGGTTTTGTCACTTACTCACTTGCAACAAAGGCCGCTTTTTTGGCAATTGATGCT
CGCGAATTAGCGGCACACGGAGTTGTCAGCGCATTTACAGCCAAGGCGATGGCTGAACATGCTCGGCGTAAGGCAGCGGC
GGATATAAGTGTCAGCTTTACCGGCGTTGCCGGTCCAGACACGCTGGAAGGACAGCCTGCTGGTACGGTTTGGATCGGTT
TAGCGCGGCGCGGCCAACTGCCTGAAGCACATGTTTACCATTTTCCTGGCGGTCGCAATGATGTTCGGCAGCGTGCTGTG
ATGACTGGTATGATGCTTGCATTAAGGGCGCTGCAGGCCTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

52.123

100

0.535
  cinA Streptococcus mitis SK321

52.009

100

0.533
  cinA Streptococcus pneumoniae TIGR4

51.651

100

0.53
  cinA Streptococcus pneumoniae R6

51.179

100

0.525
  cinA Streptococcus pneumoniae Rx1

51.179

100

0.525
  cinA Streptococcus mutans UA159

52.415

100

0.525
  cinA Streptococcus pneumoniae D39

50.943

100

0.523
  cinA Bacillus subtilis subsp. subtilis str. 168

44.769

99.516

0.446
  cinA Streptococcus suis isolate S10

42.328

91.525

0.387

Multiple sequence alignment