Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABR335_RS10700 Genome accession   NZ_CP158453
Coordinates   2198050..2199282 (-) Length   410 a.a.
NCBI ID   WP_026104628.1    Uniprot ID   -
Organism   Heyndrickxia faecalis strain TCI803     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2193050..2204282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR335_RS10680 (ABR335_10680) spoVS 2193148..2193408 (-) 261 WP_014098499.1 stage V sporulation protein SpoVS -
  ABR335_RS10685 (ABR335_10685) - 2193783..2194583 (-) 801 WP_014098500.1 TIGR00282 family metallophosphoesterase -
  ABR335_RS10690 (ABR335_10690) rny 2194670..2196232 (-) 1563 WP_014098501.1 ribonuclease Y -
  ABR335_RS10695 (ABR335_10695) recA 2196715..2197782 (-) 1068 WP_014098502.1 recombinase RecA Machinery gene
  ABR335_RS10700 (ABR335_10700) cinA 2198050..2199282 (-) 1233 WP_026104628.1 competence/damage-inducible protein A Machinery gene
  ABR335_RS10705 (ABR335_10705) pgsA 2199446..2200024 (-) 579 WP_014098504.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABR335_RS10710 (ABR335_10710) - 2200081..2200986 (-) 906 WP_017551555.1 RodZ family helix-turn-helix domain-containing protein -
  ABR335_RS10715 (ABR335_10715) - 2201003..2201794 (-) 792 WP_014098506.1 DUF3388 domain-containing protein -
  ABR335_RS10720 (ABR335_10720) - 2201992..2202252 (-) 261 WP_013859159.1 DUF3243 domain-containing protein -
  ABR335_RS10725 (ABR335_10725) - 2202436..2203158 (-) 723 WP_017551554.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44910.58 Da        Isoelectric Point: 5.8783

>NTDB_id=1011290 ABR335_RS10700 WP_026104628.1 2198050..2199282(-) (cinA) [Heyndrickxia faecalis strain TCI803]
MNAEIIAVGSELLLGQITNTNATFIAAQLAEIGVDVYYQTVVGDNAERLEAAIRTAEGRADLLIFTGGLGPTKDDLTKET
IASHIEKKLVTNEDAMRSIEQFFIRTKRKMTENNKKQALVIEGSKVFPNDHGMAPGMLAKSGNHYYMLLPGPPHELEPMF
IHYASPAIQEELETIEKIESRVLRFFGIGESQLETDIRHILDSQTNPTVAPLAKEGEVTLRITAKHQSAETANQMIDQVE
KEIMQIAGSYFYGYNDTTLMEALLEKLSKKQLTLACAESLTAGKFAAEMASIQGVSTMLKGGVVVYSNEAKMKLAKVKKE
TLDKYGAVSSQCAKELAENIRSIMDADIGISFTGVAGPDSLEGHPPGTVWIGIAIKGKETATYLLELPGSRNNVRTRSVK
YGCWHLLKLL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1011290 ABR335_RS10700 WP_026104628.1 2198050..2199282(-) (cinA) [Heyndrickxia faecalis strain TCI803]
GTGAATGCCGAAATTATTGCAGTCGGTTCGGAACTTTTGCTTGGCCAGATCACCAATACAAATGCCACATTTATTGCCGC
ACAATTGGCAGAGATCGGCGTGGATGTGTACTACCAGACCGTTGTCGGTGATAACGCAGAGCGGCTCGAAGCGGCAATCC
GGACAGCGGAGGGTCGCGCCGATCTATTGATTTTTACGGGTGGGCTCGGTCCGACAAAGGATGATTTAACAAAAGAAACG
ATTGCATCGCACATCGAAAAAAAACTGGTGACAAACGAAGATGCCATGCGCTCCATCGAACAGTTTTTTATCCGTACAAA
ACGAAAAATGACGGAAAACAACAAAAAGCAGGCACTGGTCATCGAAGGTTCAAAAGTGTTTCCGAATGACCACGGTATGG
CGCCGGGCATGCTGGCCAAAAGCGGAAACCACTATTATATGCTGCTGCCCGGCCCGCCGCATGAACTGGAACCGATGTTT
ATCCATTACGCAAGCCCCGCGATCCAGGAAGAACTGGAAACGATCGAAAAAATCGAATCGCGCGTCCTCCGCTTCTTCGG
GATCGGCGAATCCCAGCTGGAAACAGACATCCGCCATATACTGGACAGCCAAACCAATCCGACTGTTGCTCCGCTTGCGA
AAGAAGGGGAAGTGACACTTAGGATTACGGCGAAACACCAGTCGGCGGAAACGGCGAACCAAATGATCGATCAAGTGGAA
AAAGAGATTATGCAAATTGCCGGATCGTATTTTTACGGTTATAACGATACGACATTAATGGAGGCCCTGCTCGAAAAGCT
TTCGAAAAAACAGCTGACGCTTGCCTGCGCGGAAAGCCTGACTGCCGGCAAATTTGCAGCGGAAATGGCGTCCATCCAGG
GTGTCAGCACAATGTTGAAAGGCGGCGTTGTCGTCTATTCAAACGAAGCGAAGATGAAGCTCGCCAAAGTGAAAAAAGAA
ACGCTTGACAAGTACGGCGCCGTCAGCAGCCAGTGTGCAAAAGAACTGGCGGAAAATATCCGTAGCATTATGGATGCCGA
CATTGGCATCAGTTTTACAGGCGTGGCTGGCCCGGACTCCCTTGAAGGCCATCCGCCGGGAACCGTGTGGATCGGCATTG
CGATAAAAGGGAAAGAAACTGCCACTTATCTGTTGGAACTTCCCGGATCCCGCAACAACGTCCGCACGCGATCGGTGAAA
TACGGCTGCTGGCATTTGCTGAAACTGCTTTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.863

99.512

0.566
  cinA Streptococcus mitis SK321

46.19

100

0.473
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.473
  cinA Streptococcus pneumoniae R6

45.933

100

0.468
  cinA Streptococcus pneumoniae Rx1

45.933

100

0.468
  cinA Streptococcus mitis NCTC 12261

45.714

100

0.468
  cinA Streptococcus pneumoniae D39

45.694

100

0.466
  cinA Streptococcus mutans UA159

44.665

98.293

0.439
  cinA Streptococcus suis isolate S10

39.418

92.195

0.363

Multiple sequence alignment