Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | LLUC023_RS02230 | Genome accession | NZ_CP158368 |
| Coordinates | 439221..439610 (+) | Length | 129 a.a. |
| NCBI ID | WP_259751259.1 | Uniprot ID | - |
| Organism | Lactococcus cremoris strain UC023 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 434221..444610
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLUC023_RS02205 (LLUC023_02215) | pepA | 435080..436147 (-) | 1068 | WP_011675458.1 | glutamyl aminopeptidase | - |
| LLUC023_RS02210 (LLUC023_02220) | - | 436250..436534 (+) | 285 | WP_205288114.1 | hypothetical protein | - |
| LLUC023_RS02215 (LLUC023_02225) | - | 436579..436896 (+) | 318 | WP_011675460.1 | thioredoxin family protein | - |
| LLUC023_RS02220 (LLUC023_02230) | ytpR | 437002..437628 (+) | 627 | WP_011675461.1 | YtpR family tRNA-binding protein | - |
| LLUC023_RS02225 (LLUC023_02235) | nox | 437790..439130 (+) | 1341 | WP_021211456.1 | H2O-forming NADH oxidase | - |
| LLUC023_RS02230 (LLUC023_02240) | ssbB | 439221..439610 (+) | 390 | WP_259751259.1 | single-stranded DNA-binding protein | Machinery gene |
| LLUC023_RS02235 (LLUC023_02245) | groES | 439729..440013 (+) | 285 | WP_011675464.1 | co-chaperone GroES | - |
| LLUC023_RS02240 (LLUC023_02250) | groL | 440100..441728 (+) | 1629 | WP_011675465.1 | chaperonin GroEL | - |
| LLUC023_RS02245 (LLUC023_02255) | - | 441780..442592 (-) | 813 | WP_011675466.1 | MBL fold metallo-hydrolase | - |
| LLUC023_RS02250 (LLUC023_02260) | - | 442782..444209 (-) | 1428 | WP_011675468.1 | cell wall metabolism sensor histidine kinase WalK | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14737.83 Da Isoelectric Point: 6.4793
>NTDB_id=1010999 LLUC023_RS02230 WP_259751259.1 439221..439610(+) (ssbB) [Lactococcus cremoris strain UC023]
MNKTMLIGHLTNAPEISKTTNNKFYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRENAVNFEELLLEADELPF
MNKTMLIGHLTNAPEISKTTNNKFYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRENAVNFEELLLEADELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=1010999 LLUC023_RS02230 WP_259751259.1 439221..439610(+) (ssbB) [Lactococcus cremoris strain UC023]
ATGAATAAAACCATGTTGATTGGTCATTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATTTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAACGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA
ATGAATAAAACCATGTTGATTGGTCATTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATTTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAACGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
95.349 |
100 |
0.953 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60 |
100 |
0.605 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus mitis SK321 |
55.385 |
100 |
0.558 |
| ssbA | Streptococcus mutans UA159 |
54.615 |
100 |
0.55 |