Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABRA92_RS16165 Genome accession   NZ_CP158305
Coordinates   3356134..3357246 (-) Length   370 a.a.
NCBI ID   WP_129147990.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP93     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3351134..3362246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRA92_RS16135 hemF 3351595..3352512 (-) 918 WP_024699626.1 oxygen-dependent coproporphyrinogen oxidase -
  ABRA92_RS16140 - 3352560..3353117 (-) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  ABRA92_RS16145 purE 3353317..3353802 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ABRA92_RS16150 - 3353807..3354934 (+) 1128 WP_029802047.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ABRA92_RS16155 - 3355004..3355573 (-) 570 WP_005461441.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  ABRA92_RS16160 - 3355652..3356131 (-) 480 WP_005461440.1 DUF494 family protein -
  ABRA92_RS16165 dprA 3356134..3357246 (-) 1113 WP_129147990.1 DNA-processing protein DprA Machinery gene
  ABRA92_RS16170 - 3357230..3358324 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  ABRA92_RS16175 def 3358463..3358981 (+) 519 WP_005461416.1 peptide deformylase -
  ABRA92_RS16180 fmt 3359015..3359962 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  ABRA92_RS16185 rsmB 3360043..3361326 (+) 1284 WP_015297514.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39900.52 Da        Isoelectric Point: 6.4133

>NTDB_id=1010556 ABRA92_RS16165 WP_129147990.1 3356134..3357246(-) (dprA) [Vibrio parahaemolyticus strain VP93]
MKPRNSDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASAEKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1010556 ABRA92_RS16165 WP_129147990.1 3356134..3357246(-) (dprA) [Vibrio parahaemolyticus strain VP93]
ATGAAACCACGCAATAGCGACAGTGACCTTGCTGCCTGGCTGAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGAGAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGCATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.054

100

0.841
  dprA Vibrio cholerae strain A1552

58.808

99.73

0.586
  dprA Glaesserella parasuis strain SC1401

47.185

100

0.476
  dprA Haemophilus influenzae Rd KW20

46.588

91.081

0.424
  dprA Legionella pneumophila strain ERS1305867

47.866

88.649

0.424
  dprA Neisseria meningitidis strain C311

37.626

100

0.403
  dprA Neisseria meningitidis MC58

37.626

100

0.403
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.381
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.378

Multiple sequence alignment