Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABFV67_RS02265 Genome accession   NZ_CP158116
Coordinates   476485..477711 (-) Length   408 a.a.
NCBI ID   WP_154170154.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain IS021     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 471485..482711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS02245 (ABFV67_02245) yacG 473818..474015 (-) 198 WP_040903818.1 DNA gyrase inhibitor YacG -
  ABFV67_RS02250 (ABFV67_02250) zapD 474057..474797 (-) 741 WP_004394266.1 cell division protein ZapD -
  ABFV67_RS02255 (ABFV67_02255) coaE 474829..475437 (-) 609 WP_186463684.1 dephospho-CoA kinase -
  ABFV67_RS02260 (ABFV67_02260) pilD 475443..476309 (-) 867 WP_158138884.1 A24 family peptidase Machinery gene
  ABFV67_RS02265 (ABFV67_02265) pilC 476485..477711 (-) 1227 WP_154170154.1 type II secretion system F family protein Machinery gene
  ABFV67_RS02270 (ABFV67_02270) pilB 477730..479418 (-) 1689 WP_161438931.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFV67_RS02275 (ABFV67_02275) - 479457..479906 (-) 450 WP_154170158.1 pilin -
  ABFV67_RS02280 (ABFV67_02280) nadC 480189..481079 (-) 891 WP_186463683.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ABFV67_RS02285 (ABFV67_02285) ampD 481188..481733 (+) 546 WP_154170162.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ABFV67_RS02290 (ABFV67_02290) fldB 481730..482248 (-) 519 WP_154170164.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45061.50 Da        Isoelectric Point: 10.2098

>NTDB_id=1009813 ABFV67_RS02265 WP_154170154.1 476485..477711(-) (pilC) [Vibrio metschnikovii strain IS021]
MTLSKAQELKNYRWKGINSSGKKVSGQFLAISELEVRDKLKDQHVQIQKIKKSSLSLITRLTHRATNKEITLLTRQLSTM
LATGVPIVQALKLVADSHQKAEMKSIITQISKGVAAGTPISKAMRTASSLFDPLYVDLVQTGEQSGNLAEVFERLATYRE
KTEQLRAKVIKALIYPAMVMLVALGVSYLMLTMIIPEFELMFQGFGAELPWFTQQVLKLSHLVQAYSLVFVLLCIAIVFG
FKLIRKKSFQFRLKTSRLALTIPIVGGILCKASIAKFSRTLATSFAAGIPILDSLKTTAKTAGNLHFETAIQQVYRDTAA
GMPMYIAMRNTGAFPELVLQMVMIGEESGKLDDMLNKVATIYEFDVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1009813 ABFV67_RS02265 WP_154170154.1 476485..477711(-) (pilC) [Vibrio metschnikovii strain IS021]
ATGACGCTATCTAAAGCACAAGAACTGAAAAATTATCGCTGGAAAGGCATCAATAGCTCTGGCAAAAAAGTGTCAGGGCA
ATTTTTAGCGATCAGCGAATTGGAAGTGCGCGATAAACTCAAAGATCAACATGTGCAGATTCAAAAGATCAAAAAAAGCA
GCCTCTCTTTGATCACTCGTCTCACTCATCGCGCCACAAACAAAGAGATTACCCTGCTGACTCGCCAACTCTCGACCATG
CTCGCGACGGGGGTCCCCATTGTTCAAGCCTTAAAGTTAGTCGCTGATAGTCATCAAAAAGCAGAAATGAAATCGATCAT
CACTCAAATAAGTAAAGGCGTAGCAGCAGGAACGCCGATCTCAAAAGCAATGCGTACCGCCAGTAGCCTGTTTGACCCTC
TTTACGTTGATTTGGTACAAACGGGTGAACAATCGGGTAACTTGGCGGAAGTTTTTGAGCGCCTTGCCACCTATCGAGAG
AAAACCGAACAACTGCGCGCCAAAGTGATCAAAGCGTTAATCTATCCAGCGATGGTGATGTTGGTTGCGCTTGGCGTCTC
TTACTTAATGCTTACCATGATTATTCCTGAATTTGAGCTTATGTTTCAAGGTTTTGGTGCCGAGTTACCTTGGTTTACTC
AACAAGTACTTAAACTGTCGCATCTGGTTCAAGCCTACAGCTTAGTCTTTGTACTACTCTGCATTGCCATCGTATTCGGT
TTTAAACTTATCCGTAAAAAATCGTTCCAATTCCGTTTAAAAACCAGCCGCTTAGCACTCACTATACCGATTGTTGGTGG
CATACTCTGCAAAGCGTCGATCGCCAAATTTAGCCGAACCCTCGCCACCAGCTTTGCGGCTGGGATCCCGATTCTTGATA
GCCTTAAAACGACCGCGAAAACCGCAGGTAATCTTCATTTTGAAACGGCTATTCAACAAGTCTACCGAGATACTGCGGCA
GGCATGCCAATGTATATCGCGATGCGCAATACCGGCGCTTTCCCAGAATTGGTTCTACAAATGGTTATGATTGGCGAGGA
GTCTGGTAAGCTCGATGATATGCTGAATAAAGTAGCAACGATTTATGAATTCGACGTTGATAACACCGTAGATAATTTAG
GTAAAATCCTCGAGCCCCTAATTATTGTCTTTCTTGGTACAGTGGTTGGTGGGCTGGTCGTGGCAATGTATTTACCTATC
TTTAACTTAATGAGTGTATTGGGGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

81.373

100

0.814
  pilC Vibrio campbellii strain DS40M4

69.975

98.775

0.691
  pilC Pseudomonas stutzeri DSM 10701

41.687

98.775

0.412
  pilC Acinetobacter baumannii D1279779

40.686

100

0.407
  pilG Neisseria gonorrhoeae MS11

40.541

99.755

0.404
  pilC Acinetobacter baylyi ADP1

39.951

100

0.4
  pilG Neisseria meningitidis 44/76-A

40.049

99.755

0.4
  pilC Legionella pneumophila strain ERS1305867

40.351

97.794

0.395

Multiple sequence alignment