Detailed information NTG1009310

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ABNK63_RS04390
• Genome accession: NZ_CP157948
• Coordinates: 1007402..1008673 (-)
• Length: 423 a.a.
• NCBI ID: WP_007809536.1
• Uniprot ID: I4VV19
• Organism: Rhodanobacter sp. IGA1.0
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1006953..1031066	1007402..1008673	within	0

Gene organization within MGE regions

Location: 1006953..1031066

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNK63_RS04385 (ABNK63_04380)	-	1006953..1007345 (-)	393	WP_007809537.1	endonuclease domain-containing protein	-
ABNK63_RS04390 (ABNK63_04385)	pilC	1007402..1008673 (-)	1272	WP_007809536.1	type II secretion system F family protein	Machinery gene
ABNK63_RS04395 (ABNK63_04390)	pilB	1008816..1010540 (-)	1725	WP_350016799.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABNK63_RS04400 (ABNK63_04395)	-	1010888..1011130 (+)	243	WP_007809534.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	-
ABNK63_RS04405 (ABNK63_04400)	-	1011127..1011522 (+)	396	WP_007809533.1	type II toxin-antitoxin system VapC family toxin	-
ABNK63_RS04410 (ABNK63_04405)	-	1011854..1012708 (+)	855	WP_350016800.1	glycosyltransferase family 2 protein	-
ABNK63_RS04415 (ABNK63_04410)	-	1012701..1013927 (+)	1227	WP_350016801.1	glycosyltransferase	-
ABNK63_RS04420 (ABNK63_04415)	-	1014119..1014817 (+)	699	WP_350016802.1	class I SAM-dependent methyltransferase	-
ABNK63_RS04425 (ABNK63_04420)	-	1014954..1015883 (-)	930	WP_350016803.1	glycosyltransferase	-
ABNK63_RS04430 (ABNK63_04425)	-	1015889..1017034 (-)	1146	WP_350016804.1	glycosyltransferase family 4 protein	-
ABNK63_RS04435 (ABNK63_04430)	asnB	1017034..1018971 (-)	1938	WP_350016805.1	asparagine synthase (glutamine-hydrolyzing)	-
ABNK63_RS04440 (ABNK63_04435)	-	1018974..1020071 (-)	1098	WP_350016806.1	glycosyltransferase	-
ABNK63_RS04445 (ABNK63_04440)	-	1020068..1020874 (-)	807	WP_350016807.1	methyltransferase domain-containing protein	-
ABNK63_RS04450 (ABNK63_04445)	-	1020864..1022024 (-)	1161	WP_350016808.1	oligosaccharide flippase family protein	-
ABNK63_RS04455 (ABNK63_04450)	-	1022311..1024419 (-)	2109	WP_350016809.1	hypothetical protein	-
ABNK63_RS04460 (ABNK63_04455)	-	1024652..1026607 (-)	1956	WP_350016810.1	hypothetical protein	-
ABNK63_RS04465 (ABNK63_04460)	pilA	1026708..1027133 (-)	426	WP_350016811.1	pilin	Machinery gene
ABNK63_RS04470 (ABNK63_04465)	-	1027578..1028006 (-)	429	WP_350016812.1	pilin	-
ABNK63_RS04475 (ABNK63_04470)	-	1028205..1030337 (+)	2133	WP_350016813.1	S9 family peptidase	-
ABNK63_RS04480 (ABNK63_04475)	-	1030776..1031066 (+)	291	WP_350016814.1	nucleotidyltransferase domain-containing protein	-

Sequence

Protein

• Length: 423 a.a.
• Molecular weight: 46131.26 Da
• Isoelectric Point: 9.7628

>NTDB_id=1009310 ABNK63_RS04390 WP_007809536.1 1007402..1008673(-) (pilC) [Rhodanobacter sp. IGA1.0]
MATATATNIDKARALGAQRAEVSKLTTYEWVALDKRGKRMKGDMPAKNASLVKAELRRQGMNPQTVRERSKPLFGSSGST
VKPGDVAVFSRQIATMMASGVPMVQAFDIIADGQKNVRFKNILLDVKQNIEGGASLHEALGRYPVQFDELYCNLVHAGEA
SGVLDTVLDTVATYKERTEAIKKKIKKALFYPMMVLAVVFLVMLIMLLFVVPVFSKTFQDAGADLPAPTQVLVNMSEFMQ
SYWWLVIGIIVGSIVAIVFAKKRSLKFAHFLDRLSLKLPVMGNIVRNSAIARFSRTLGVTFRAGVPLVEALEAVSGATGS
IVYGDAVRQMRDDISVGHQLQLAMKQTGLFPNMVVQMTAIGEESGALDNMLFKVAEFYEEEVENAVDTLSTLLEPIIMVV
LGGIVGGMVVALYLPIFKLAGTV

Nucleotide

• Length: 1272 bp

>NTDB_id=1009310 ABNK63_RS04390 WP_007809536.1 1007402..1008673(-) (pilC) [Rhodanobacter sp. IGA1.0]
ATGGCCACGGCTACCGCAACGAATATCGACAAGGCGCGCGCGCTGGGCGCCCAACGTGCCGAAGTCAGCAAGCTGACCAC
CTACGAGTGGGTGGCGCTGGACAAGCGCGGCAAGCGCATGAAGGGGGACATGCCGGCGAAGAACGCCTCGCTGGTGAAGG
CCGAACTGCGCCGCCAGGGCATGAATCCGCAGACGGTGCGCGAGCGCTCCAAGCCCCTGTTCGGTTCCTCCGGCAGCACG
GTGAAGCCGGGCGACGTGGCCGTCTTCAGCCGCCAGATCGCCACCATGATGGCGTCCGGCGTGCCGATGGTGCAGGCCTT
CGACATCATCGCCGATGGCCAGAAGAACGTCCGCTTCAAGAACATCCTGCTGGACGTGAAGCAGAACATCGAGGGTGGCG
CGTCCCTGCATGAGGCGCTGGGCCGCTACCCGGTCCAGTTCGACGAGCTCTACTGCAACCTGGTCCATGCCGGCGAAGCC
TCCGGCGTGCTGGACACCGTGCTGGACACCGTGGCGACCTACAAGGAACGCACCGAGGCGATCAAGAAGAAGATCAAGAA
GGCACTGTTCTACCCCATGATGGTGCTGGCCGTCGTGTTCCTGGTCATGCTGATCATGCTGCTGTTCGTGGTGCCGGTGT
TCTCCAAGACCTTCCAGGACGCCGGCGCCGACCTGCCCGCGCCGACCCAGGTGCTGGTGAACATGTCGGAGTTCATGCAG
AGCTACTGGTGGCTGGTGATCGGCATCATCGTGGGCAGCATCGTGGCGATTGTCTTCGCCAAGAAGCGCTCGCTGAAGTT
CGCCCACTTCCTGGACCGGCTGTCGCTGAAGCTGCCGGTGATGGGCAACATCGTGCGCAACTCGGCGATCGCCCGCTTCT
CGCGCACGCTGGGCGTGACTTTCCGCGCCGGCGTGCCCCTGGTCGAGGCGCTGGAGGCCGTGTCGGGCGCCACCGGCAGC
ATCGTCTACGGCGACGCGGTCAGGCAGATGCGCGACGACATCTCGGTCGGCCACCAGCTGCAGCTGGCGATGAAGCAGAC
CGGCCTGTTCCCGAACATGGTGGTGCAGATGACCGCCATCGGCGAGGAATCCGGCGCACTGGACAACATGCTGTTCAAGG
TGGCCGAGTTCTACGAGGAAGAAGTGGAGAACGCGGTCGACACCCTGTCCACCCTGCTCGAGCCGATCATCATGGTGGTG
CTGGGCGGTATCGTGGGCGGCATGGTGGTGGCGCTGTACTTGCCGATCTTCAAGCTCGCCGGTACGGTCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (293-415)

• Type II secretion system (T2SS), protein F (T2SSF) (89-212)

3D structure

• AlphaFold DB: I4VV19

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	54.135	94.326	0.511
pilC	Pseudomonas stutzeri DSM 10701	51.25	94.563	0.485
pilC	Acinetobacter baylyi ADP1	49.024	96.927	0.475
pilC	Acinetobacter baumannii D1279779	49.5	94.563	0.468
pilG	Neisseria meningitidis 44/76-A	42.377	91.489	0.388
pilG	Neisseria gonorrhoeae MS11	42.377	91.489	0.388
pilC	Vibrio campbellii strain DS40M4	39.75	94.563	0.376
pilC	Vibrio cholerae strain A1552	38.734	93.381	0.362