Detailed information
Bioinformatically predicted
Overview
| Name | Cj0011c | Type | Machinery gene |
| Locus tag | QUD54_RS07500 | Genome accession | NZ_AP027370 |
| Coordinates | 1455641..1455883 (+) | Length | 80 a.a. |
| NCBI ID | WP_286336133.1 | Uniprot ID | - |
| Organism | Hydrogenimonas cancrithermarum strain ISO32 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1450641..1460883
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUD54_RS07470 (HCR_14710) | lspA | 1451599..1452039 (+) | 441 | WP_286336128.1 | signal peptidase II | - |
| QUD54_RS07480 (HCR_14720) | thrS | 1452344..1454167 (+) | 1824 | WP_286336129.1 | threonine--tRNA ligase | - |
| QUD54_RS07485 (HCR_14730) | infC | 1454164..1454697 (+) | 534 | WP_286336130.1 | translation initiation factor IF-3 | - |
| QUD54_RS07490 (HCR_14740) | rpmI | 1454845..1455042 (+) | 198 | WP_286336131.1 | 50S ribosomal protein L35 | - |
| QUD54_RS07495 (HCR_14750) | rplT | 1455182..1455538 (+) | 357 | WP_286336132.1 | 50S ribosomal protein L20 | - |
| QUD54_RS07500 (HCR_14760) | Cj0011c | 1455641..1455883 (+) | 243 | WP_286336133.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| QUD54_RS07505 (HCR_14770) | - | 1455890..1456939 (+) | 1050 | WP_286336134.1 | NAD-dependent epimerase | - |
| QUD54_RS07510 (HCR_14780) | - | 1456979..1458652 (+) | 1674 | WP_286336135.1 | ABC transporter ATP-binding protein | - |
| QUD54_RS07515 (HCR_14790) | - | 1458712..1459620 (+) | 909 | WP_286336136.1 | glycosyltransferase family 9 protein | - |
| QUD54_RS07520 (HCR_14800) | - | 1459617..1460609 (+) | 993 | WP_286336137.1 | glycosyltransferase | - |
Sequence
Protein
Download Length: 80 a.a. Molecular weight: 8903.67 Da Isoelectric Point: 10.4773
>NTDB_id=100930 QUD54_RS07500 WP_286336133.1 1455641..1455883(+) (Cj0011c) [Hydrogenimonas cancrithermarum strain ISO32]
MYKYLAVFLMSILSLMAAININTADITTLTHIKGIGPSKAKAIVEYRKKHGRFESVEELVQVKGIGKKSLEKIKSDIPVK
MYKYLAVFLMSILSLMAAININTADITTLTHIKGIGPSKAKAIVEYRKKHGRFESVEELVQVKGIGKKSLEKIKSDIPVK
Nucleotide
Download Length: 243 bp
>NTDB_id=100930 QUD54_RS07500 WP_286336133.1 1455641..1455883(+) (Cj0011c) [Hydrogenimonas cancrithermarum strain ISO32]
ATGTATAAATACCTCGCCGTTTTTCTTATGAGTATCCTTTCGTTGATGGCCGCGATCAATATCAATACCGCCGACATCAC
AACGCTGACGCATATCAAAGGGATCGGACCGTCCAAAGCGAAAGCGATCGTCGAGTATCGAAAAAAGCATGGGCGATTCG
AAAGTGTCGAGGAACTCGTCCAGGTCAAAGGAATCGGCAAAAAGAGTTTAGAGAAAATCAAATCCGATATCCCGGTGAAG
TAG
ATGTATAAATACCTCGCCGTTTTTCTTATGAGTATCCTTTCGTTGATGGCCGCGATCAATATCAATACCGCCGACATCAC
AACGCTGACGCATATCAAAGGGATCGGACCGTCCAAAGCGAAAGCGATCGTCGAGTATCGAAAAAAGCATGGGCGATTCG
AAAGTGTCGAGGAACTCGTCCAGGTCAAAGGAATCGGCAAAAAGAGTTTAGAGAAAATCAAATCCGATATCCCGGTGAAG
TAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
48.75 |
100 |
0.488 |
| comE | Neisseria gonorrhoeae MS11 |
46.914 |
100 |
0.475 |
| comE | Neisseria gonorrhoeae MS11 |
46.914 |
100 |
0.475 |
| comE | Neisseria gonorrhoeae MS11 |
46.914 |
100 |
0.475 |
| comE | Neisseria gonorrhoeae MS11 |
46.914 |
100 |
0.475 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
56.25 |
80 |
0.45 |
| comEA | Latilactobacillus sakei subsp. sakei 23K |
44.928 |
86.25 |
0.388 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
49.206 |
78.75 |
0.387 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
50 |
75 |
0.375 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
47.541 |
76.25 |
0.363 |
| comEA | Legionella pneumophila str. Paris |
52.727 |
68.75 |
0.362 |
| comEA | Legionella pneumophila strain ERS1305867 |
52.727 |
68.75 |
0.362 |