Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QUE41_RS19195 Genome accession   NZ_AP027368
Coordinates   4154414..4155646 (+) Length   410 a.a.
NCBI ID   WP_286340565.1    Uniprot ID   -
Organism   Ferrimonas sp. YFM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4149414..4160646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE41_RS19170 (F0521_36990) ampD 4150204..4150776 (-) 573 WP_286340560.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QUE41_RS19175 (F0521_37000) - 4150822..4151322 (+) 501 WP_286340561.1 TIGR02281 family clan AA aspartic protease -
  QUE41_RS19180 (F0521_37010) nadC 4151329..4152168 (+) 840 WP_286340562.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QUE41_RS19185 (F0521_37020) - 4152420..4152842 (+) 423 WP_286340563.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QUE41_RS19190 (F0521_37030) pilB 4152876..4154417 (+) 1542 Protein_3698 type IV-A pilus assembly ATPase PilB -
  QUE41_RS19195 (F0521_37040) pilC 4154414..4155646 (+) 1233 WP_286340565.1 type II secretion system F family protein Machinery gene
  QUE41_RS19200 (F0521_37050) pilD 4155682..4156563 (+) 882 WP_286340566.1 A24 family peptidase Machinery gene
  QUE41_RS19205 (F0521_37060) coaE 4156560..4157165 (+) 606 WP_286340567.1 dephospho-CoA kinase -
  QUE41_RS19210 (F0521_37070) - 4157158..4157913 (+) 756 WP_286340568.1 cell division protein ZapD -
  QUE41_RS19215 (F0521_37080) yacG 4157910..4158110 (+) 201 WP_286340569.1 DNA gyrase inhibitor YacG -
  QUE41_RS19220 (F0521_37090) mutT 4158165..4158545 (-) 381 WP_286340570.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44848.78 Da        Isoelectric Point: 9.4706

>NTDB_id=100909 QUE41_RS19195 WP_286340565.1 4154414..4155646(+) (pilC) [Ferrimonas sp. YFM]
MTHQAKGGDASIIEFLWQGANANGRRTKGEIRAISSEEARAQLRKQGIHAVRLRRKPKPLFGRGASVTPMEMAMVTRQVA
TMLMAGVPLVTTLQMIGRGHDKEAMRTLLGEILLQVEAGLPLSKALRPHPKQFDDLYCDLVEAGEHSGALDRVFDRIATY
REKAEALKSKIKKAMFYPTAVIVVAVIVTVILLLFVVPQFEEIFASFDAQLPTFTQLVIQLSRFLQLAWPYFAGGLIALI
WGFIQAHRRSQRFKDWIDALLLKLPLVGPILNKGAVARFSRTLATTFAAGVPLIDGLESAAGAAGNAVYRDAVQAVRHEV
ISGLQMNMAMRTQGVFPDMLIQMVLIGEESGSLDEMLNKVANIYEMQVDDAVDGLSTLIEPLLMVVIGSLVGGLVVAMYL
PIFQLGSVVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=100909 QUE41_RS19195 WP_286340565.1 4154414..4155646(+) (pilC) [Ferrimonas sp. YFM]
ATGACCCATCAGGCCAAAGGGGGCGACGCCTCCATCATCGAATTTCTGTGGCAGGGGGCCAATGCCAACGGTCGCCGCAC
CAAGGGTGAGATCCGCGCCATCAGTTCGGAGGAGGCCCGCGCCCAGCTGCGCAAACAGGGGATCCACGCGGTGCGGTTGA
GGCGCAAGCCCAAGCCCCTGTTCGGAAGGGGCGCCAGCGTGACCCCTATGGAGATGGCCATGGTCACCCGACAGGTGGCC
ACCATGCTGATGGCTGGCGTCCCCCTGGTCACCACCCTGCAGATGATAGGCCGGGGCCATGACAAGGAGGCGATGCGCAC
CCTGCTGGGGGAGATCCTGCTGCAGGTGGAAGCTGGACTGCCCCTCTCCAAGGCCCTGCGCCCCCACCCCAAGCAGTTCG
ACGACCTCTACTGCGATCTGGTGGAGGCGGGGGAACACTCCGGGGCCCTGGACCGAGTGTTTGACCGCATCGCCACCTAC
AGGGAGAAGGCGGAGGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTATCCCACGGCGGTGATTGTGGTGGCGGTGAT
CGTCACGGTGATCCTGCTGCTGTTCGTGGTGCCCCAGTTTGAGGAGATCTTCGCCAGCTTCGATGCGCAGCTGCCGACGT
TCACCCAGCTGGTGATTCAGCTGTCCCGCTTCCTTCAGCTGGCCTGGCCCTATTTTGCCGGGGGGCTGATTGCTCTGATC
TGGGGGTTCATCCAGGCCCATCGCCGCTCCCAGAGGTTCAAAGACTGGATTGACGCCCTGCTGCTGAAGCTGCCCCTGGT
GGGCCCGATCCTCAACAAAGGTGCCGTCGCCCGCTTCTCCCGCACCTTGGCCACCACTTTTGCCGCCGGGGTCCCGCTGA
TCGACGGGCTGGAGTCCGCCGCCGGTGCCGCCGGTAATGCCGTCTACCGAGATGCGGTTCAGGCGGTGCGCCACGAGGTG
ATCTCCGGACTGCAGATGAACATGGCGATGCGTACCCAGGGGGTGTTTCCAGACATGCTGATTCAGATGGTGCTGATCGG
CGAGGAGTCCGGGTCCCTGGATGAGATGCTCAACAAGGTGGCCAACATCTATGAGATGCAGGTGGATGATGCCGTAGATG
GGCTCTCTACCCTGATTGAACCCCTGCTGATGGTGGTGATCGGCTCACTCGTGGGTGGATTAGTGGTGGCAATGTATCTT
CCGATCTTCCAATTGGGTAGCGTGGTCGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.684

96.341

0.527
  pilC Acinetobacter baylyi ADP1

52.141

96.829

0.505
  pilC Acinetobacter baumannii D1279779

51.128

97.317

0.498
  pilC Legionella pneumophila strain ERS1305867

48.872

97.317

0.476
  pilC Vibrio cholerae strain A1552

45.477

97.073

0.441
  pilG Neisseria gonorrhoeae MS11

43.614

100

0.441
  pilG Neisseria meningitidis 44/76-A

43.133

100

0.437
  pilC Vibrio campbellii strain DS40M4

43.216

97.073

0.42

Multiple sequence alignment