Detailed information NTG0100910

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QUE41_RS19200
• Genome accession: NZ_AP027368
• Coordinates: 4155682..4156563 (+)
• Length: 293 a.a.
• NCBI ID: WP_286340566.1
• Uniprot ID: -
• Organism: Ferrimonas sp. YFM
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4150682..4161563

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUE41_RS19175 (F0521_37000)	-	4150822..4151322 (+)	501	WP_286340561.1	TIGR02281 family clan AA aspartic protease	-
QUE41_RS19180 (F0521_37010)	nadC	4151329..4152168 (+)	840	WP_286340562.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QUE41_RS19185 (F0521_37020)	-	4152420..4152842 (+)	423	WP_286340563.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
QUE41_RS19190 (F0521_37030)	pilB	4152876..4154417 (+)	1542	Protein_3698	type IV-A pilus assembly ATPase PilB	-
QUE41_RS19195 (F0521_37040)	pilC	4154414..4155646 (+)	1233	WP_286340565.1	type II secretion system F family protein	Machinery gene
QUE41_RS19200 (F0521_37050)	pilD	4155682..4156563 (+)	882	WP_286340566.1	A24 family peptidase	Machinery gene
QUE41_RS19205 (F0521_37060)	coaE	4156560..4157165 (+)	606	WP_286340567.1	dephospho-CoA kinase	-
QUE41_RS19210 (F0521_37070)	-	4157158..4157913 (+)	756	WP_286340568.1	cell division protein ZapD	-
QUE41_RS19215 (F0521_37080)	yacG	4157910..4158110 (+)	201	WP_286340569.1	DNA gyrase inhibitor YacG	-
QUE41_RS19220 (F0521_37090)	mutT	4158165..4158545 (-)	381	WP_286340570.1	8-oxo-dGTP diphosphatase MutT	-
QUE41_RS19225 (F0521_37100)	secA	4158615..4161302 (-)	2688	WP_286340571.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32652.10 Da
• Isoelectric Point: 7.3243

>NTDB_id=100910 QUE41_RS19200 WP_286340566.1 4155682..4156563(+) (pilD) [Ferrimonas sp. YFM]
MDYWITLFHTQPWLFITLVALLGLILGSFLNVVIHRLPIMMDRDWRIECQEYCEQPVTRSDLPETFNLATPRSRCGHCQT
PIPMKHNIPVLSYLLLGGKCHSCQGSIGLRYPMVELMTAAVLAMMAWQFGPTPTFAALSLLSLGLIALAFIDADTMLLPD
QITLPLLWLGLLFNIKDGLVPLEQAVAGAAFGYLSLWSVFQLFKVVTGKEGMGFGDFKLLALFGAWLGWKPLLLIILLSS
VLGAAYGILQLALGKLKRDNPMPFGPWIILAGWIALLWGDQIVHWYLTRVLGL

Nucleotide

• Length: 882 bp

>NTDB_id=100910 QUE41_RS19200 WP_286340566.1 4155682..4156563(+) (pilD) [Ferrimonas sp. YFM]
ATGGATTACTGGATCACCCTATTTCACACACAGCCCTGGCTGTTCATCACCCTGGTTGCCCTGCTGGGCCTGATCCTGGG
CAGCTTCCTCAATGTGGTGATCCACCGTCTGCCCATCATGATGGACAGGGACTGGCGCATCGAATGCCAGGAATACTGCG
AGCAGCCGGTGACCCGCTCCGACCTGCCAGAGACATTCAACCTGGCCACCCCGAGATCCCGCTGCGGTCACTGTCAGACC
CCCATCCCCATGAAGCACAACATTCCTGTGCTCAGCTATCTGCTGTTGGGGGGCAAGTGCCACAGCTGCCAAGGCAGCAT
AGGCCTGCGTTACCCCATGGTGGAGCTGATGACCGCGGCGGTATTGGCAATGATGGCCTGGCAGTTCGGGCCCACCCCGA
CCTTTGCCGCCCTGTCGCTGCTGAGCCTGGGGCTGATCGCCCTGGCCTTCATCGACGCCGACACCATGCTGCTGCCGGAC
CAGATCACCCTGCCCCTGCTGTGGCTGGGCCTGCTGTTCAACATCAAGGATGGCCTGGTGCCCCTGGAACAGGCGGTCGC
TGGCGCGGCCTTCGGCTACCTCAGCCTGTGGAGCGTCTTCCAGCTGTTCAAGGTGGTCACCGGCAAGGAGGGGATGGGGT
TTGGCGACTTCAAGCTGCTGGCACTCTTTGGTGCCTGGCTGGGGTGGAAGCCGCTGCTGCTGATCATCCTGCTCTCCTCG
GTACTTGGCGCGGCCTACGGCATACTGCAGCTGGCCCTGGGCAAGCTGAAGCGGGACAACCCCATGCCCTTCGGCCCCTG
GATCATCTTGGCAGGCTGGATAGCCCTGCTCTGGGGCGACCAGATTGTCCATTGGTACCTGACCCGGGTGCTGGGCCTGT
GA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (141-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.577	99.317	0.522
pilD	Vibrio campbellii strain DS40M4	51.37	99.659	0.512
pilD	Acinetobacter baumannii D1279779	51.838	92.833	0.481
pilD	Acinetobacter nosocomialis M2	51.103	92.833	0.474
pilD	Neisseria gonorrhoeae MS11	46.57	94.539	0.44