Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABNF92_RS06885 Genome accession   NZ_CP157802
Coordinates   1491424..1493493 (-) Length   689 a.a.
NCBI ID   WP_349344067.1    Uniprot ID   A0AAU7MT18
Organism   Marinobacter sp. MMG032     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1486424..1498493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNF92_RS06870 (ABNF92_06870) - 1488022..1489578 (-) 1557 WP_349343795.1 AAA family ATPase -
  ABNF92_RS06875 (ABNF92_06875) aroB 1489634..1490728 (-) 1095 WP_349343796.1 3-dehydroquinate synthase -
  ABNF92_RS06880 (ABNF92_06880) aroK 1490721..1491287 (-) 567 WP_222466555.1 shikimate kinase AroK -
  ABNF92_RS06885 (ABNF92_06885) pilQ 1491424..1493493 (-) 2070 WP_349344067.1 type IV pilus secretin PilQ Machinery gene
  ABNF92_RS06890 (ABNF92_06890) - 1493559..1494107 (-) 549 WP_349343797.1 pilus assembly protein PilP -
  ABNF92_RS06895 (ABNF92_06895) - 1494110..1494721 (-) 612 WP_349343798.1 type 4a pilus biogenesis protein PilO -
  ABNF92_RS06900 (ABNF92_06900) - 1494721..1495284 (-) 564 WP_349343799.1 PilN domain-containing protein -
  ABNF92_RS06905 (ABNF92_06905) pilM 1495284..1496345 (-) 1062 WP_349343800.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 689 a.a.        Molecular weight: 74255.41 Da        Isoelectric Point: 4.3336

>NTDB_id=1008363 ABNF92_RS06885 WP_349344067.1 1491424..1493493(-) (pilQ) [Marinobacter sp. MMG032]
MFRKLNVYVSVIAFGLLSGLANAVTLEDVSFSSLPGERLEVTLKFDGAPPEPSGYTIERPARIAVDLRDTTSGLNSRSVP
LGSGNAQSMTVVETKDRTRLIFNLVELVPYETVRAGNSLVMTIGGQAQVGMVASSSTSEPRSSSTAEAMSSDSLAGVDFR
RGKDGEGRVLVDLGSSSTPVGLTERAGKIRLTMDGINVPADLRRRLDVTDFATPVTRIDTFVEGGNAVVEITPEGNYDYI
AYQSGSQFTVSVEELSQEEAESRREEKFPYTGDKLSLNFQDIEVRSVLQLIADFTGLNLVASDTVGGSITLRLQNVPWDQ
ALDLILKTKGLDKRQIGNVLLVAPADEIAAREKLELETSKQIAELAPVRLDIVQVNYAKAADIVALIKEDEELISDRGFV
SSDVRTNTISVRETAEKLEEIRRLVSTWDVPVRQVSIEARIVRAQTNVAENLGVRWGGAAYDVSGDNVFTVGGSQSAVEE
ARQAASGNNNTITFPGALAVDLGVSGEGTSSFAIGWGSDNFLVDLELSALESDGQAEVVSQPRVVTADRQTASIKSGEEI
PYQEATSSGATNIEFKEAVLSLEVTPQITPDDKIIMDLVVNQDSRGEVTAGIPSINTNSVTTQVLVGNGETVVLGGIFQS
EVATQTTKTPFLGDIPYLGRIFKRTEHLDERSELLIFITPKIIKNDLLR

Nucleotide


Download         Length: 2070 bp        

>NTDB_id=1008363 ABNF92_RS06885 WP_349344067.1 1491424..1493493(-) (pilQ) [Marinobacter sp. MMG032]
ATGTTCAGAAAACTCAATGTATACGTCAGCGTGATTGCTTTTGGGTTGTTATCCGGCCTGGCCAACGCGGTCACGCTGGA
AGACGTGTCGTTTTCGTCGCTACCGGGGGAGCGGCTTGAAGTCACACTGAAGTTTGATGGGGCGCCGCCGGAACCATCCG
GGTATACCATAGAGCGTCCCGCTCGAATTGCAGTTGACCTGCGGGACACAACCAGCGGCCTTAATAGCCGAAGCGTGCCT
CTTGGTTCGGGCAACGCCCAGAGCATGACAGTTGTGGAAACCAAGGATCGGACGCGGTTGATTTTTAACCTGGTAGAGCT
TGTGCCCTATGAGACGGTTCGTGCGGGGAATTCTCTGGTCATGACGATCGGCGGACAGGCCCAAGTCGGCATGGTAGCAA
GCTCGTCCACCAGTGAGCCTCGAAGCAGCTCGACGGCGGAAGCAATGTCTTCTGACTCTCTGGCCGGGGTGGACTTTCGT
CGTGGCAAGGATGGTGAAGGCCGTGTTCTGGTTGACCTGGGCAGCTCCAGCACGCCAGTGGGCCTGACTGAGCGTGCCGG
CAAGATCCGTCTGACGATGGATGGTATTAACGTTCCTGCGGACCTTCGGCGCCGACTCGACGTCACAGACTTCGCAACAC
CCGTTACCCGTATTGATACCTTTGTAGAAGGTGGCAATGCTGTGGTCGAGATTACCCCAGAGGGAAATTACGACTACATT
GCATACCAGTCTGGCAGCCAGTTCACCGTGAGTGTTGAGGAGCTTAGCCAGGAAGAGGCGGAATCTCGTCGGGAAGAGAA
GTTCCCGTATACCGGTGACAAGCTGTCCCTTAACTTTCAGGATATTGAGGTTCGCTCGGTCCTTCAGTTGATTGCCGATT
TCACCGGATTGAACCTGGTGGCAAGTGATACTGTAGGCGGTAGCATTACCCTGCGCCTTCAGAACGTACCCTGGGACCAA
GCGCTGGATCTGATCCTCAAAACCAAAGGGCTTGATAAGCGTCAGATTGGTAATGTGTTGCTGGTAGCTCCTGCGGACGA
GATTGCTGCACGGGAGAAGTTGGAGCTCGAAACCAGCAAGCAAATTGCAGAACTTGCGCCTGTTCGTTTGGACATCGTTC
AGGTGAACTATGCCAAGGCCGCGGACATTGTCGCCTTGATCAAGGAAGACGAAGAGCTGATTTCAGATCGCGGCTTTGTA
TCCTCGGACGTCAGGACGAACACGATCAGTGTTCGGGAGACAGCGGAAAAACTTGAGGAAATTCGCAGGCTGGTATCGAC
TTGGGATGTTCCCGTGCGCCAAGTGTCTATTGAAGCGCGTATTGTTCGGGCCCAGACTAATGTGGCCGAAAACCTCGGTG
TTCGCTGGGGAGGCGCTGCGTACGATGTGAGTGGGGATAACGTGTTTACTGTTGGTGGTTCTCAAAGTGCAGTAGAAGAA
GCTCGGCAGGCTGCCAGCGGAAACAACAACACGATAACATTCCCTGGGGCACTTGCGGTGGATCTCGGTGTGAGTGGCGA
AGGTACGTCTTCCTTTGCGATAGGATGGGGCAGCGATAACTTCCTGGTTGATCTGGAGTTGTCCGCATTGGAAAGTGATG
GTCAGGCGGAAGTGGTATCTCAGCCAAGAGTGGTTACGGCTGACCGTCAAACAGCTTCCATAAAATCGGGTGAAGAAATT
CCTTATCAGGAGGCTACCTCGAGTGGGGCGACCAACATCGAGTTCAAGGAAGCCGTTCTTTCATTGGAGGTAACGCCCCA
GATCACGCCAGACGACAAGATCATTATGGATCTCGTGGTAAATCAGGATTCAAGAGGCGAAGTGACGGCTGGTATTCCGT
CCATCAATACGAACTCTGTTACGACACAAGTCTTGGTGGGCAATGGTGAAACAGTAGTTCTGGGAGGTATTTTCCAGTCG
GAGGTCGCGACGCAGACTACCAAGACGCCCTTCCTTGGAGATATTCCTTATCTTGGTCGTATCTTTAAAAGGACAGAGCA
CCTTGATGAGCGCAGCGAGCTGCTGATCTTCATTACGCCGAAGATCATCAAGAACGATCTGCTTCGTTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(298-344)

Bacterial type II/III secretion system short domain (Secretin_N)

(372-434)

AMIN domain (AMIN)

(38-120)

Bacterial type II and III secretion system protein (Secretin)

(529-684)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

48.237

100

0.496
  pilQ Acinetobacter baumannii strain A118

38.934

100

0.414
  pilQ Acinetobacter baumannii D1279779

38.934

100

0.414
  comQ Acinetobacter baylyi ADP1

39.831

100

0.409
  pilQ Legionella pneumophila strain ERS1305867

40.889

97.968

0.401
  pilQ Legionella pneumophila strain Lp02

40.889

97.968

0.401

Multiple sequence alignment